Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151056g00001 ATGCATTTCGCTAAGCTCGATGATTCTCCTATGTTCCGCCAGCAGCTGCAGTGCTTGGAGGAAAGCGCAGAATCATTACGCATCAGATGCTGTAAATTTCACAAAGGATGTAAAAAATACACGGAAGGGCTAGGAGAGGTACATGATGGGGACGTTGCATTTGTAACTGCCCTTGAAGATTTTGGGAGTGGCCATAATGATCCTCATTTTGCTGCTTTAGGAGAACCAGTTATGAACAAATTTACTGTTGCTTTGAGAGAAATCAGTACATACAAAGAACTTCTTCGGTCACAGGTAGAGCAGTTGCTCAATGACCGGCTACAACAGATTATGAATGTTGATATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGACAAAGCTTCCTCTGTATATGATCAGGCACGAGACAAGTTTATGTCACTGAAAAAAACCACAAAGCCTGATGTTGCCACTACTATGGAAGAGGAATTGCAGAATGCAAGAACCTCATTTGAAGAAGCACGTTTCAGTCTGGTTGCTGCTCTCAATAATATTGAAGCCAAGAAGAGATTTGAGTTCTTAGAGGCTGTCACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGATTTTGGATTATGTACACCAATCAAGAGAAAGTTATGATGAAGAACAGATTTCTCTTTATAAAAGAATGGAAGAGTACAAAAAACGAGTCTATCAAGAGAGTAGAATGTCCTTAAATGGCCCTTGCGGTTCTCCTCATGGAGAAGTTGTGCATCCTTTTTCTAGGATATCAAATGAAGTGGCTGCTGTAGTGAAGGAATCTGCTGCAAGTGGAAAGGTTGAAATCATTAGGCAAGGGTTTCTTTCAAAGCGATCCTCTAATTTAAGGGGTGACTGGAAAAGAAGTCTTCTAAGTCGATGGCTTTCTTCTCATTACCATGGAGGTGTCCATGATGAAAGATATGTAGCACGTCACACAGTAAACCTGCTGACATCCACAATTAAAGCTGATTCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATCTCACCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAACGGAGTCATTGCATCCTTGTTGAGTGTCCAGACACTGGGAACGCCTCCCTGCGCTAAATCAGAAGCTGGAGACGGTGACACTGCTAACAAGATTGATGTGCCAGAGGGTTCTCTAGATGATAGTAACATTGTGACCGACAAGGCTGGATCAAGGAAAGCCATTACGCCTGGTACCCAATATCGTACATATAAGAGTTTGCAGTTGCAAAGACACAGTAATACGAGAAGTGAAAAGCCAATTGAAATTCTAAGAAGGGTGAGTGGAAATGACAAGTGTGCAGATTGTGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGAATCCTTATATGCATTGAATGTTCCGGTGTTCATCGTAATCTTGGAGTACATATATCAAAAGTAAGATCATTGACACTAGACGTGAAAGTCTGGGACCCTTATGTCTTAGCCATGTTTAAGTCACTGGGGAATTCCTTTGCAAACTCAGTTTGGGAAGAGTTAGATTCAAAGAGTACTTCGCAAACTGATGATGCATCTGTTGGTTCATCCAATGCCAGTGGAGACAAAGTAGTTGACGCTAGAAAACCAAAACCTCATGATTCTATTTCATTAAAGGAGAAGTTCATTCATGCAAAGTACTCTGAGAAAAAGTTAATTTGCCGGACAAAAGAAAGCGACCCTGTCCGTTCCGTGGCAAAGAAAGTGTGGAAAAGCATTTGTGCCAATGACAAGAAAGCAGTTTACAGGCATATTGTCAAATCAGCTGTGGATGTCAATACCATCAATGGTCACACATTATCTGATGGTTCTTGCAACATAACTTCATCAGATAATCCAAAAATATCATCATCTTCACAATCATCATCATCTCAATGTGAAAATCAGCTGATGGCTGAGAACTTACAACCTGGTTCTGGTGTTCTTCACCTGGCATGCCTAACTGCTGACGCTGGTATGGTGGAGCTGCTCCTACAATATGGTGCAAACATTAGTGCTTGCGATTCAAAAGGTCAGACACCACTTCATTACTGTATTACAGGAGGGAATACTGAAGCTGCCAAAGTGCTACTTCAGAGGGGAGCCAATTCAAATGCTCAAGATAAAGAAGGCAACACTCCTATTAAGCTAGCGTCACAATCAAACTCCATTGATTCTGAAACTTTGGCTCTCTTGGCAAGAAGATGA 2283 0.4139 MHFAKLDDSPMFRQQLQCLEESAESLRIRCCKFHKGCKKYTEGLGEVHDGDVAFVTALEDFGSGHNDPHFAALGEPVMNKFTVALREISTYKELLRSQVEQLLNDRLQQIMNVDIHEVKEARKRFDKASSVYDQARDKFMSLKKTTKPDVATTMEEELQNARTSFEEARFSLVAALNNIEAKKRFEFLEAVTGIMDAHLRYFQQILDYVHQSRESYDEEQISLYKRMEEYKKRVYQESRMSLNGPCGSPHGEVVHPFSRISNEVAAVVKESAASGKVEIIRQGFLSKRSSNLRGDWKRSLLSRWLSSHYHGGVHDERYVARHTVNLLTSTIKADSDQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGTPPCAKSEAGDGDTANKIDVPEGSLDDSNIVTDKAGSRKAITPGTQYRTYKSLQLQRHSNTRSEKPIEILRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPYVLAMFKSLGNSFANSVWEELDSKSTSQTDDASVGSSNASGDKVVDARKPKPHDSISLKEKFIHAKYSEKKLICRTKESDPVRSVAKKVWKSICANDKKAVYRHIVKSAVDVNTINGHTLSDGSCNITSSDNPKISSSSQSSSSQCENQLMAENLQPGSGVLHLACLTADAGMVELLLQYGANISACDSKGQTPLHYCITGGNTEAAKVLLQRGANSNAQDKEGNTPIKLASQSNSIDSETLALLARR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151056g00001 760 SMART PH_update 279 377 IPR001849 -
Stsc151056g00001 760 SUPERFAMILY Ankyrin repeat 667 750 IPR036770 -
Stsc151056g00001 760 ProSiteProfiles ARF GTPase-activating proteins domain profile. 448 593 IPR001164 GO:0005096
Stsc151056g00001 760 SMART ANK_2a 702 731 IPR002110 GO:0005515
Stsc151056g00001 760 SMART ANK_2a 669 698 IPR002110 GO:0005515
Stsc151056g00001 760 Gene3D Arf GTPase activating protein 430 589 IPR038508 -
Stsc151056g00001 760 Gene3D - 590 760 IPR036770 -
Stsc151056g00001 760 MobiDBLite consensus disorder prediction 539 564 - -
Stsc151056g00001 760 Pfam Ankyrin repeats (3 copies) 674 750 IPR002110 GO:0005515
Stsc151056g00001 760 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 430 593 - -
Stsc151056g00001 760 PANTHER CENTAURIN/ARF 3 758 IPR045258 GO:0005096
Stsc151056g00001 760 ProSiteProfiles Ankyrin repeat region circular profile. 669 700 - -
Stsc151056g00001 760 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Stsc151056g00001 760 Pfam Putative GTPase activating protein for Arf 450 584 IPR001164 GO:0005096
Stsc151056g00001 760 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Stsc151056g00001 760 Gene3D - 268 382 IPR011993 -
Stsc151056g00001 760 SUPERFAMILY PH domain-like 278 379 - -
Stsc151056g00001 760 CDD ArfGap 451 579 - -
Stsc151056g00001 760 SUPERFAMILY ArfGap/RecO-like zinc finger 448 585 IPR037278 -
Stsc151056g00001 760 PRINTS HIV Rev interacting protein signature 460 479 IPR001164 GO:0005096
Stsc151056g00001 760 PRINTS HIV Rev interacting protein signature 502 523 IPR001164 GO:0005096
Stsc151056g00001 760 PRINTS HIV Rev interacting protein signature 479 496 IPR001164 GO:0005096
Stsc151056g00001 760 CDD BAR_SFC_plant 15 211 IPR035670 -
Stsc151056g00001 760 SMART arf_gap_3 448 592 IPR001164 GO:0005096
Stsc151056g00001 760 Pfam PH domain 280 374 IPR001849 -
Stsc151056g00001 760 SUPERFAMILY BAR/IMD domain-like 6 298 IPR027267 -
Stsc151056g00001 760 ProSiteProfiles PH domain profile. 278 375 IPR001849 -
Stsc151056g00001 760 Gene3D Arfaptin homology (AH) domain/BAR domain 4 237 IPR027267 -
Stsc151056g00001 760 Coils Coil 118 138 - -
Stsc151056g00001 760 ProSiteProfiles Ankyrin repeat profile. 702 734 IPR002110 GO:0005515
Stsc151056g00001 760 ProSiteProfiles Ankyrin repeat region circular profile. 702 734 - -
Stsc151056g00001 760 MobiDBLite consensus disorder prediction 639 659 - -
Stsc151056g00001 760 CDD PH_ACAP 281 379 - -
Stsc151056g00001 760 MobiDBLite consensus disorder prediction 388 413 - -
Stsc151056g00001 760 Pfam BAR domain of APPL family 6 223 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151056g00001 Stsc-Chr151056 5067 10518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151056g00001 451 585 C2H2 Transcription Factor Family AT3G07940 38.235 1.03e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151056g00001 K12489 - gmx:100792517 997.653