Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00031 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATCAAATACTCAAAACCTACCTCAACAACCATGGCACTCCTGCTAATTGGATTGCTCTTCCTAGCAAAGCAGGTCTCAAGCGCTGCGGCAAAAGCTGTCGTCTCAGATGGCTCAATTATCTCAGGCCTCACATCAACCATGGAGCTTTCACCAACCATGAAGATAACCTTATCTCCAACCTTTATGCTACCATCGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTACCTGGAAGAACTGATAATGATGTCAAAAACCACTGGAACACTAAGCTTAAGAAAAAGTTCTTGGCAGCAGGAATCAACACCAACAATGCTGCCACCACTACTGCCCTCAACACTGCATCTTCAAAGTTCACTGCTCCTCAGGTTGAAAACTTTGATCATATTATTAATAAAAACTCAACTACTTGTTTTGAATCTGGTGGTGTTTTGGGTTTGCACCAAGAACCTTTCCCAGTTCCATCAAAGATGCTACCTTTGGAATCTGATGTTTCAGCTGCTAATTCCTTGGTAATAAAGGAGAATAATGATCATGATGGTCATCACTGGCTTGGTTATTATGCTGAAGAAGAAGATGATGCATTCTTGCTTGATTTTGTGCAAAATGGATTTGCTTATTCTCAAGATAAAAACACCCAACTTGATCCATCATCATCATCAACTGTAATCTAA 738 0.4146 MGRSPCCDKANVKRGPWSHEEDQILKTYLNNHGTPANWIALPSKAGLKRCGKSCRLRWLNYLRPHINHGAFTNHEDNLISNLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAAGINTNNAATTTALNTASSKFTAPQVENFDHIINKNSTTCFESGGVLGLHQEPFPVPSKMLPLESDVSAANSLVIKENNDHDGHHWLGYYAEEEDDAFLLDFVQNGFAYSQDKNTQLDPSSSSTVI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00031 245 Gene3D - 69 141 - -
Stsc151055g00031 245 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc151055g00031 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc151055g00031 245 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc151055g00031 245 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc151055g00031 245 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc151055g00031 245 Gene3D - 7 68 - -
Stsc151055g00031 245 CDD SANT 16 62 IPR001005 -
Stsc151055g00031 245 PANTHER OS09G0431300 PROTEIN 1 161 - -
Stsc151055g00031 245 CDD SANT 70 113 IPR001005 -
Stsc151055g00031 245 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc151055g00031 245 FunFam Transcription factor RAX3 7 68 - -
Stsc151055g00031 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc151055g00031 245 SMART sant 67 115 IPR001005 -
Stsc151055g00031 245 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00031 Stsc-Chr151055 198154 198976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00031 1 118 MYB Transcription Factor Family AT5G65790 76.271 2.96e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151055g00031 Myb_DNA-binding 4.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151055g00031 K09422 - gmx:100779092 244.202