Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00030 ATGATGCTCGGTGAACCACACCGTGCAAATCCCACCGTCCATGTGCCACCGTGGCCAACTCTGCTTGATGATCCAACGGCCGAGATGTATTCACCCTTCTCTGTCACCGGGATGTCCGTACACTCCGATTCCAATGCCGCCGATTACTCTCCCTACTACATGCATGAGGCCATCTCCGCGCTGCAGCGCTACCTTCCCTCCAACGACGCCGATGACTCCGATTCTGAGGCTGCGCGTGAGGCCGACGCGCCGGTGGACGCTTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTCAGGAGGTGCGCGCGTGGCAGGTCCCATGACTGGACCGAGTGTCCGTACGCACACCCCGGAGAGAAGGCTCGCCGCCGTGACCCGAGGAAGTTCCACTACTCCGGCGCAGCGTGCCCCGATTTCCGTAAGGGTGGTTGCAAGAAGGGTGACGCATGCGAGTACGCGCACGGCGTGTTCGAGTGCTGGCTCCATCCCGCGCGATACCGCACGCAGCCATGCAAGGACGGAACCAGTTGCCGGAGGAGGGTGTGTTTCTTCGCTCACACGCCGGAGCAACTCAGGGTTTTGCCGCAGCACAGTCCCCGAAGCGTTGATTCCTATGACGGTTCCCCTCTGAGACATGCAATGGAGTCGTCGTGTGCGAAGGCGCTGCCGTTTCTGTCATCTCCGGGATCGGATTCTCCGCCGGCGGAGGAGTCTCCACCGATGTCTCCGGTGACTCGGTCGTTGGGGCGTTCAGTGAATGTGAGCGAGATGATGGCTTCTCTCCGTAATCTGCAACTGAGTAAGGTTAAGTCGTTACCCTCTTCATGGAATGTTCCAATGGGTTCTCCCGGGTACGGATCTCCCCGTGGACCCATGATCCGACCCGGATTCTGTAGCCTTCCTTCGACACCAACGGAGGGGCCAGGTGGGAGTCGTGTGAACTGCTTTGAACTTTGGGATCAGAGTTGCTGCTGTGAGGAGGAGCCTGTTATGGAGCGGGTTGAGTCCGGGAGGGGAATCAGGACCCGGATGTTCGAGAAGTTGAGCAAAGAGAATTCTCTTGATAGATCGGGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTCATCAAGTGA 1122 0.5891 MMLGEPHRANPTVHVPPWPTLLDDPTAEMYSPFSVTGMSVHSDSNAADYSPYYMHEAISALQRYLPSNDADDSDSEAAREADAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPDFRKGGCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRHAMESSCAKALPFLSSPGSDSPPAEESPPMSPVTRSLGRSVNVSEMMASLRNLQLSKVKSLPSSWNVPMGSPGYGSPRGPMIRPGFCSLPSTPTEGPGGSRVNCFELWDQSCCCEEEPVMERVESGRGIRTRMFEKLSKENSLDRSGGAPDVGWVSELIK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00030 373 MobiDBLite consensus disorder prediction 228 249 - -
Stsc151055g00030 373 FunFam Zinc finger CCCH domain-containing protein 66 90 158 - -
Stsc151055g00030 373 PANTHER UNKEMPT FAMILY MEMBER 52 373 IPR045234 -
Stsc151055g00030 373 Gene3D - 133 196 - -
Stsc151055g00030 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 157 IPR000571 GO:0046872
Stsc151055g00030 373 ProSiteProfiles Zinc finger C3H1-type profile. 133 159 IPR000571 GO:0046872
Stsc151055g00030 373 SMART c3hfinal6 132 158 IPR000571 GO:0046872
Stsc151055g00030 373 SMART c3hfinal6 167 190 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00030 Stsc-Chr151055 193272 194836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00030 82 281 C2H2 Transcription Factor Family AT5G12850 50.481 3.05e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc151055g00030 zf-CCCH 2.2e-05 CL0537