Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00025 ATGAATAATAAGATGAAGAGCAAGTTGAGAAGGTCGGATCTGATAGATACGAAGCTGCAAGAAGAGCATCAATCATCCAAACAGTGCCCCTCTTGTGGACATAACTTTGAACCCACCACCAACAAGAACAAGCCGGAGGAGTGGGGGTGGTACGGTCTGCCAGCAGGAGTGAAGTTCGATCCAACAGATCAGGAACTGATAGAGCATCTGGAAGCTAAAGTGGAGGAAAATAAATCACACCCTCTGATTGATGAGTTCATTCCCACCATCGAAGGAGAAGATGGAATATGTTACACACATCCGGAGAAGCTTCCAGGTGTAAGGAGGGATGGGCTGAGCAGACACTTCTTCCACAGGCCATCTAAGGCATACACAACTGGAACCAGAAAGAGAAGAAAGATTATTCAAAGCCATCGTCATGAGGATGAGGCGGATCAGAGAGGAGACACCCGGTGGCACAAGACCGGTAAGACAAGGCCAGTCATGCTGAGAGGAAAGCAGAAGGGGTGCAAGAAGATTCTGGTGCTGTACACCAACTTCGGCAAGAACAGGAAGCCCGAGAAGACCAACTGGGTGATGCATCAGTACCACCTCGGAGTCCACGAAGAGGAGACTGATGGGGAGCTCGTGGTGTCCAAGATTTTCTACCAGACTCACCCCAGGCACTGCACTTCTGCTGCTGCACATCACCCGGTTGTTGGATTCGCTCCTCCTCCTCCGTTGGAACCTTTGAGCTTGATCCCTGAGGTTGGGATTTCCACATGCCATCAGCAACATACTCTTATTGGATCACCCTTCCATGAAAACACACCCACCATCCTTGATGACCTCTCTACTAGATTCATCACTACTACTACTACTACTCATTTCAACCAGCAGCATGATAATAAAGTAATTGGAGGAGGAGGAGGAGAAGGCTCTACTTCTGGTTTAGAGGAACTCATCATGAGCTGCACTTCAGCTTCAACCACTCATCATAATATCATCAAAGAGTCATCGAACCCGCAAGAAGCTGAGTGGTTGAAGTACTCTTCTTCTTCTTATTGGCCTGATCCTCAGCCTCAGCTCCATTGGTAA 1077 0.4828 MNNKMKSKLRRSDLIDTKLQEEHQSSKQCPSCGHNFEPTTNKNKPEEWGWYGLPAGVKFDPTDQELIEHLEAKVEENKSHPLIDEFIPTIEGEDGICYTHPEKLPGVRRDGLSRHFFHRPSKAYTTGTRKRRKIIQSHRHEDEADQRGDTRWHKTGKTRPVMLRGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGVHEEETDGELVVSKIFYQTHPRHCTSAAAHHPVVGFAPPPPLEPLSLIPEVGISTCHQQHTLIGSPFHENTPTILDDLSTRFITTTTTTHFNQQHDNKVIGGGGGEGSTSGLEELIMSCTSASTTHHNIIKESSNPQEAEWLKYSSSSYWPDPQPQLHW 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00025 358 Pfam No apical meristem (NAM) protein 54 198 IPR003441 GO:0003677|GO:0006355
Stsc151055g00025 358 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 316 IPR044799 GO:0003700
Stsc151055g00025 358 SUPERFAMILY NAC domain 46 217 IPR036093 GO:0003677|GO:0006355
Stsc151055g00025 358 ProSiteProfiles NAC domain profile. 53 217 IPR003441 GO:0003677|GO:0006355
Stsc151055g00025 358 MobiDBLite consensus disorder prediction 1 43 - -
Stsc151055g00025 358 FunFam NAC domain-containing protein 73 62 221 - -
Stsc151055g00025 358 MobiDBLite consensus disorder prediction 24 39 - -
Stsc151055g00025 358 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151055g00025 358 Gene3D NAC domain 62 221 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00025 Stsc-Chr151055 141798 144385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00025 8 343 NAC Transcription Factor Family AT5G56620 49.517 3.53e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151055g00025 NAM 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151055g00025 - - ahf:112790160 455.292