Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00023 ATGTTACCCAACAATACCTGCCTTCTCACTTTCCTTATCCTCCTCCTCACTACCATCCATTTAGCAGAACCCACTAGTGTCTCTGTTGGTGTCGGTGTTGGTGTTGGAGTAGGCGTTGCCATTGGCAATGGTGGTCCACCTTCAGAGCCTCCCTCATCAAAGTTGGACACTGCCTACAAAGCTCTGCAGGCATGGAAATCAGCCATCACTGATGATCCTCTCAAGCTTCTAGATACATGGGTTGGTCCTAATGTATGCTCATACCAAGGAGTCTTCTGTTCACCTCCTCATGACGATGAAATCTCTTCTCTTTCAACATCCACTGTCACTGCCACAGTTGTAGTTGCAGGAATCGACCTCAACCATGCAAATCTCAAAGGAACTCTCGTCAAAGAACTCTCTATACTCGTTGACATGTCACTTCTTCACCTCAACAGTAACAGGTTCACCGGCACAGTTCCTGACACATTCAAAGACCTTGTTTCTCTAGAAGAACTGGACCTCAGCAACAACCAACTCTCTGGTCCATTCCCCATTGTCACTCTCTACATGCCAAGCCTCCTTTACTTGGACCTCAGATTCAACTCATTCTCAGGTCAACTCCCTGATGAACTCTTCAACAGGAAGCTGGATGCCATATTCCTCAACAACAACCAATTCCAAGGTGAGATCCCTGAGACCATGGGGAATTCACCTGCATCAGTGATCAATCTGGCTAACAACAAGCTCAGTGGGAACATTCCATCAAGCTTCGGAATCATGGGAAATAAGCTAAAAGAGGTTCTGCTCCTCAACAACGAGCTAACAGGTTGCATCCCAGAAGGGGTGGGTCTGTTTGATGAACTTGAAGTGTTTGATGTGAGCTTCAATTCACTGATGGGGCACTTGCCAGACACAATATCATGCTTGCAAGACATCGAGGTTCTGAATTTGGGACACAACAAGCTCTCAGGAGACTTATCTGATGTGATCTGCTCCTTGACAAGTTTGGTGAACCTGACCGTTGCTTACAACTTTTTCTCTGGTTTTAGCCAGCAATGCAGCAGGCTTTTCAACATTGGCTTTGATTTCTCAGGGAACTGCATTCCTGGTAGGGACATGCAGAGACCTCAACCAGAGTGCTCTGTCATTCCAGGTGGCACCCTCAATTGCTTTAGAATCCCTACTCCAAGGCCTCTTGTTTGTGCTTCTTTGCCTTCAATCATCTTCTCTAATAATATGCAATCATCCTCACACCATACTTCTTCTTCTTCTTCTTCTTCAAATCCTTGA 1272 0.4591 MLPNNTCLLTFLILLLTTIHLAEPTSVSVGVGVGVGVGVAIGNGGPPSEPPSSKLDTAYKALQAWKSAITDDPLKLLDTWVGPNVCSYQGVFCSPPHDDEISSLSTSTVTATVVVAGIDLNHANLKGTLVKELSILVDMSLLHLNSNRFTGTVPDTFKDLVSLEELDLSNNQLSGPFPIVTLYMPSLLYLDLRFNSFSGQLPDELFNRKLDAIFLNNNQFQGEIPETMGNSPASVINLANNKLSGNIPSSFGIMGNKLKEVLLLNNELTGCIPEGVGLFDELEVFDVSFNSLMGHLPDTISCLQDIEVLNLGHNKLSGDLSDVICSLTSLVNLTVAYNFFSGFSQQCSRLFNIGFDFSGNCIPGRDMQRPQPECSVIPGGTLNCFRIPTPRPLVCASLPSIIFSNNMQSSSHHTSSSSSSSNP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00023 423 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
Stsc151055g00023 423 Pfam Leucine rich repeat 142 196 IPR001611 GO:0005515
Stsc151055g00023 423 FunFam Leucine-rich repeat extensin-like protein 1 59 230 - -
Stsc151055g00023 423 Gene3D Ribonuclease Inhibitor 56 234 IPR032675 -
Stsc151055g00023 423 Gene3D Ribonuclease Inhibitor 235 421 IPR032675 -
Stsc151055g00023 423 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Stsc151055g00023 423 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 45 414 - -
Stsc151055g00023 423 PRINTS Leucine-rich repeat signature 163 176 - -
Stsc151055g00023 423 PRINTS Leucine-rich repeat signature 303 316 - -
Stsc151055g00023 423 SUPERFAMILY L domain-like 61 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00023 Stsc-Chr151055 131998 133269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00023 47 384 Leucine-rich Repeat extension Gene Families AT3G22800 48.387 3.32e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151055g00023 - - gmx:100820611 566.229