Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00017 ATGTCTAACTTCCATTCCATTTTCCATGTGACATTATTACTCCTTCTTGTTATTGTTCTGCAAAATCCAAGAGCAACAGAATGCCACACCAAGGGGATTCGACCTGGGCATTCTGCTGTGGGGAGTGTGATTCCCATAAACAGAACACAAGCCCAATTATCAGAACAACAGTTCATGAGATGGGTCAAGTTTGTGGGTGGCCTCAAACACTCTGTCTTCGGCATTGCCATGAACAAGCTCTTCCCTTCTCACACGATTCACGTTTCTAAGAAACCCGGAAAAGGAGGCTTCTCTTCTATCCAATCAGCCATTGATTCTCTTCCCTTCATCAACCTTGTTAGAGTTGTAATTAAGGTCCATGCAGGGGTTTACACAGAGAAAGTTAACATCCCACCATTGAAATCGTTCATAACGATAGAAGGAGAAGGAGCGGATAAGACAATAGTTGAATGGGGTGACACTGCTGATAAGGCGGCTCCGGGGGCAAAAGGGCAACTGCTAGGAACGTACGGGTCTGCTACATTTGCAGTGAATTCAGCTTACTTCATAGGGAAGAACATGACATTCAAGAACACGGCACCCGTTCCGGCGAATGGAGCAGTAGGGAAGCAGGCAGTGGCCCTCAGAATTTCAGGAGACACAGCCATGTTTATTGGATGCAAATTCTTGGGTGCTCAGGACACACTGTATGATCACCTGGGCAGGCATTACTACAAGGATTGTTACATTGAAGGCTCCGTTGATTTCATATTCGGCAACGCTCTCTCTTTGTTTGAGGGGTGTCACGTGCATGCTATAGCACAGAATGTAGGAGCAGTAACAGCGCAAGGGAGGAGCAGCTTTTTGGAGGACACGGGGTTCTCATTTGTGCACTGCAAGGTCACGGGATCAGGGGCACTGTACCTTGGAAGGGCATGGGGTCCCTTCTCTCGTGTGGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGACTGTATTCTATGGGCAGTACAAATGCACAGGACCTGGAGCAAGCTTTGCTGGGAGAGTAGCGTGGTCAAGGGAACTCACCGATCAGGAAGCTAAACCATTTATTTCACTTGCCTACATTGATGGCTCTGAGTGGATCAAATCCCTTTTTTGA 1137 0.4714 MSNFHSIFHVTLLLLLVIVLQNPRATECHTKGIRPGHSAVGSVIPINRTQAQLSEQQFMRWVKFVGGLKHSVFGIAMNKLFPSHTIHVSKKPGKGGFSSIQSAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGEGADKTIVEWGDTADKAAPGAKGQLLGTYGSATFAVNSAYFIGKNMTFKNTAPVPANGAVGKQAVALRISGDTAMFIGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNVGAVTAQGRSSFLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWTVFYGQYKCTGPGASFAGRVAWSRELTDQEAKPFISLAYIDGSEWIKSLF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00017 378 Gene3D - 82 377 IPR012334 -
Stsc151055g00017 378 Pfam Pectinesterase 91 370 IPR000070 GO:0030599|GO:0042545
Stsc151055g00017 378 ProSitePatterns Pectinesterase signature 2. 243 252 IPR033131 -
Stsc151055g00017 378 FunFam Pectinesterase 82 376 - -
Stsc151055g00017 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 375 - -
Stsc151055g00017 378 SUPERFAMILY Pectin lyase-like 82 376 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00017 Stsc-Chr151055 98747 100793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00017 47 374 Carbohydrate Esterase AT5G47500 44.838 3.23e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151055g00017 K01051 - gmx:100793773 614.379