Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151055g00004 ATGATGGAGAACGTTAGCGTTATAGATTTGGGAGGTTTCGATCTGGACGAGGCTCTGGCTACGGTGAGCGGAGATTCGCGGGTGGTGATTGCAGCGGCATCGAAGAGCTTCGTGTCAAAGTTGCCGGCGGCAGAAGCAGAAGACGTGAAAGAGGAGGATGTGTGCTCGGTATGCATGGAAGGTTTTCAAGGCGGAGGAAACAAGAGAGTCCCGTGCGGCCACGTGTACCACTCAGAATGCATCATTCTCTGGCTGTCCCGCTCCAACTCCTCTTGTCCTCTCTGCCGCCGCCATATCTTCCTCACTCAGCAGATTGTCGAAATTCATTCAAGTGATGACACGAAACTGTTGCCATCCATCATACGCAGCCCATAA 375 0.528 MMENVSVIDLGGFDLDEALATVSGDSRVVIAAASKSFVSKLPAAEAEDVKEEDVCSVCMEGFQGGGNKRVPCGHVYHSECIILWLSRSNSSCPLCRRHIFLTQQIVEIHSSDDTKLLPSIIRSP 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151055g00004 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 32 98 - -
Stsc151055g00004 124 Pfam Ring finger domain 54 96 IPR001841 -
Stsc151055g00004 124 SUPERFAMILY RING/U-box 45 103 - -
Stsc151055g00004 124 SMART ring_2 55 95 IPR001841 -
Stsc151055g00004 124 CDD RING-H2_RNF103 51 97 - -
Stsc151055g00004 124 SMART ringv_2 54 96 IPR011016 GO:0008270
Stsc151055g00004 124 ProSiteProfiles Zinc finger RING-type profile. 55 96 IPR001841 -
Stsc151055g00004 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 100 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151055g00004 Stsc-Chr151055 14735 15428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151055g00004 54 105 C3H Transcription Factor Family AT3G60080 49.057 2.04e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151055g00004 - K22378 gmx:102669154 103.219