Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151054g00026 ATGGCTGTGGTGAGTCCTGTGCCTGCAACAACACAAAGGATGGGTTCTGGGAGGCCAGTTCATGAAATTGGGGTCAGTAGTGGTGAGATTGTTGAGGAGCCTAATCAAGCTGTGGTAGTTGACCAACCAATCTATATTGCTGTGTCAAAAGAAGTGAAGGAGAGCAAGGTGAATCTGATTTGGGCTATTCAGAACTCTGGAGGGAGGAGGATTTGCATACTTCATGTTCATGTTCCTGCAACCAAGATCCCTTTGCCTGAAATGGGTGCTAAGTTCCCTCCAAGTTCACTGAAAGAGGAGCAGGTTCGAGCATACCGGGATAAAGAAAAGCAAACCATGGATAAGACACTGGAGGAGTATCTCGGTATATGTCAACGGATGGGGACGCGGGCAGAGAAAGTGCATATTGAAATGGACAACATTGAACAAGGAATTTTAGAACTTGTCTCCCGACACCGCATCCAAAGGCTTATCATGGGAGCAGCATCTGACCGATCCTATTCTAGGAGAATGATGGACCTGAGATCTAAGAAAGCCATCTTTGTACGTGATCAAGCTCCACCATTTTGTCGTATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCGCAGTTCGAGTGAAGATAATTTAGTTGCACCTCCTTTGGTGCAGCAAGTGCCAAACTCTGCTGCTGAACATCCAGTACTCCCGAGATCTCAGTCTGTTGTTACTTTGGGGCAAAATCAAACTAGTCATCGTCGGGAGTTATTTCGCAAAGTAAAATCTAGCAATGATGGTCATGTAGCGAGCATTATGCCTGATTCTTCTCCAGATAACTCTGAAGGGTTCTCAACTCCACTAAATAGGATAGGTACCGATTTAAGTTCTGATGAGTCAGATCGGCTGTCAAGGACAAGGAGCCCTTCAGCTTTGTCGGTTTGCTCCGATAGTAGTGCTGTGGACCCAACGATGACCCCAAATTCGATTAGTGAGATTACGGAGAACGTAGCAGAGTTGACTTTGAGCCACGTGATCAAGGAGGATCTTCATCATTCTTCTCCTCCTAGTGTACTGGATGGAGGAATGAATGATACCATATATGATCAACTTGAATTGGCTATGGCTGAGGCCGAGAAAGCCACACGAAACGCATATCAAGAAACATATAGGCGTGGGAAAGCTGAAAAGGAGGCCATTGAAGCTATGCGGAAGGCTAAAGCCTCTGAAAGTTCATATTTGGAGGAGTTGAATCTGAGGAAAAGGGCCGAGGAAGAACTGCAAAAAGAAAAAGAACAACTTGAAAGTATGAAGATCCAAAGAGACAAGGTTAAGGAAGAACTCCAACTTGCCCTAGATCAGAAGTCATCACTGGAGAGTCAAATTGCGTCATCCGAACTTATGATAAAGGAGTATGAGCAGAAGATTATTTCTGCAGTGGATTTGTTACAAAGCTACAAGAAAGAACGGGACGAGTTGCAGGTGCAGCGTGACGATGCGCTGAGAGAGGCCACAGAGTTGAGAAAAAAACAAGGAGAGGCCTCTGGCATGCACACACCGCCGTTGTTCTCGGAGTTCTCTTTCTTTGAGATCAAGCAAGCAACAAATAACTTCGATCCATCCCGAAAGATAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTTTGTTGCGTCACTCTGAGGTGGCTATAAAGATGTTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAAGAGGTTGATGTATTGAGCAAGTTAAGGCATCCAAATCTTATCACACTTGTTGGAGCCTGCCCAGAATCCTTTACTCTTATCTATGAGTATTTACCGAATGGGAGCCTTGAAGACCGTCTCATTTGCAAGGATAACACACCTCCGTTGTCATGGCAAACTCGAATTCGCATTGCTGCAGAACTTTGTTCTGCTCTCATCTTCCTTCACTCAAGTAAACCGCACAGCATAGTGCATGGTGACTTGAAACCCTCTAACATTCTCCTGGATGCAAACCTTGTGAGCAAGCTCAGCGACTTTGGAATCTGCCGCATATTATCTCGTCGTGAAGGTTCAGTTGATAACACTACAGAGTGTTGGAGAACCCATCCGAAGGGAACTTTTGTCTACATGGATCCCGAATTCCTTGCGTCCGGGGAACTTACTCCTAAATCAGATGTTTATTCCTTTGGAATCATATTGTTGAGATTGTTGACAGGGAGACCGGCCTTGGGAATAACAAAGGAAGTGTCCTATGCATTGGAAACCGGAAAACTGAAATCCCTGTTGGATCCTTTAGCTGGAGACTGGCCATTCGTGCAAGCCGAACAATTGGCTCGCCTGGCCATGAGGTGTTGCGAGATGAATAGAAAGAACCGGCCGGATCTTTATTCAGATGTGTGGAGGGTATTGGACCCAATGAGGGCTTCCTCCGGAGGCACACTAAGTTCTTCAGGGCTTTACCAACCAATCCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTAATGCGAGATCCGNNNNNNNNNNATGTAGCCGCGGATGGCTTCACTTATGAAGCCGAGGCCATAAGAGGGTGGCTTGACAGTGGCCACGACGATTCGCCAATGACAAATTCGAAGCTTGCACACCGCGCTCTTGTTCCGAACCGCGCTCTCAAGTCTGCAATTCAGGACTGGCTTCAAAGTCACTAA 2676 0.4578 MAVVSPVPATTQRMGSGRPVHEIGVSSGEIVEEPNQAVVVDQPIYIAVSKEVKESKVNLIWAIQNSGGRRICILHVHVPATKIPLPEMGAKFPPSSLKEEQVRAYRDKEKQTMDKTLEEYLGICQRMGTRAEKVHIEMDNIEQGILELVSRHRIQRLIMGAASDRSYSRRMMDLRSKKAIFVRDQAPPFCRIQFICKGHLIHTRDRSSSEDNLVAPPLVQQVPNSAAEHPVLPRSQSVVTLGQNQTSHRRELFRKVKSSNDGHVASIMPDSSPDNSEGFSTPLNRIGTDLSSDESDRLSRTRSPSALSVCSDSSAVDPTMTPNSISEITENVAELTLSHVIKEDLHHSSPPSVLDGGMNDTIYDQLELAMAEAEKATRNAYQETYRRGKAEKEAIEAMRKAKASESSYLEELNLRKRAEEELQKEKEQLESMKIQRDKVKEELQLALDQKSSLESQIASSELMIKEYEQKIISAVDLLQSYKKERDELQVQRDDALREATELRKKQGEASGMHTPPLFSEFSFFEIKQATNNFDPSRKIGEGGYGSIFKGLLRHSEVAIKMLHSDSMQGPLEFQQEVDVLSKLRHPNLITLVGACPESFTLIYEYLPNGSLEDRLICKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLVSKLSDFGICRILSRREGSVDNTTECWRTHPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVSYALETGKLKSLLDPLAGDWPFVQAEQLARLAMRCCEMNRKNRPDLYSDVWRVLDPMRASSGGTLSSSGLYQPIPSYFICPIFQEVMRDPXXXXVAADGFTYEAEAIRGWLDSGHDDSPMTNSKLAHRALVPNRALKSAIQDWLQSH 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151054g00026 891 Coils Coil 408 505 - -
Stsc151054g00026 891 CDD STK_N 43 198 - -
Stsc151054g00026 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 891 IPR013083 -
Stsc151054g00026 891 SMART Ubox_2 821 887 IPR003613 GO:0004842|GO:0016567
Stsc151054g00026 891 SMART serkin_6 533 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151054g00026 891 PANTHER OS02G0152300 PROTEIN 44 886 - -
Stsc151054g00026 891 Pfam Protein kinase domain 536 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151054g00026 891 ProSiteProfiles Protein kinase domain profile. 533 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151054g00026 891 Gene3D HUPs 34 172 IPR014729 -
Stsc151054g00026 891 FunFam receptor-like protein kinase FERONIA 497 605 - -
Stsc151054g00026 891 MobiDBLite consensus disorder prediction 1 21 - -
Stsc151054g00026 891 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 55 168 - -
Stsc151054g00026 891 SUPERFAMILY RING/U-box 809 890 - -
Stsc151054g00026 891 MobiDBLite consensus disorder prediction 264 289 - -
Stsc151054g00026 891 MobiDBLite consensus disorder prediction 222 325 - -
Stsc151054g00026 891 Pfam U-box domain 818 891 IPR003613 GO:0004842|GO:0016567
Stsc151054g00026 891 CDD RING-Ubox_WDSUB1-like 819 877 - -
Stsc151054g00026 891 MobiDBLite consensus disorder prediction 301 325 - -
Stsc151054g00026 891 Gene3D Transferase(Phosphotransferase) domain 1 606 809 - -
Stsc151054g00026 891 SUPERFAMILY Protein kinase-like (PK-like) 512 790 IPR011009 -
Stsc151054g00026 891 ProSiteProfiles U-box domain profile. 817 891 IPR003613 GO:0004842|GO:0016567
Stsc151054g00026 891 Coils Coil 363 383 - -
Stsc151054g00026 891 ProSitePatterns Protein kinases ATP-binding region signature. 539 560 IPR017441 GO:0005524
Stsc151054g00026 891 Gene3D Phosphorylase Kinase; domain 1 518 605 - -
Stsc151054g00026 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151054g00026 Stsc-Chr151054 170828 176582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151054g00026 1 891 U-box Gene Family AT2G45910 50.998 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc151054g00026 Pkinase 9.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151054g00026 - - gmx:100807515 1306.2