Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151054g00009 ATGATGTGTACTGGTGATGAGCCTTTGGATTTGTATAAGTTATTCATGGTGGTGAAGGAGAAAGGTGGTTATGATGCTGTTTGTAAGAACATGCTGTGGGATTTGGTTGCTGAAGAGTATGGTTTGGGTTTGAATGTTGGTTCGTCTGTTGAACTTGTTTATAGTAAGCACTTGAGTACATTAGAGACATGGCTGAAGAATGTTGCTGATAGTAAGTTCCCTGAGTGTGGATTAATGGATGATAGGGTTAGTTTCGGTAAGAAGTTGATGGAGTTGCAGACCAATTTCTTGTTGGACATTTACAGCGAGGAAGGGGAAGGGGATGAAATCAAGACCGTATGTGATTTCTTAGATGGAAGGAAGTTGTGTGGAACTAATAGAGTTAGGGGATTGAATCCTGAGCTCAGCGGTGCAAAGAAAATGGTTGATTTGAAAACCCTGGACCTTAAGATGAATGGGCCTAGTATTGGAAACTTTTGTAGCCATAACTTTTCAAATAATTCAGGTGATAAACTGGACCATTTGAGTGAAATTAAGACATCAGCAGTGGACGTATCTGGTGAAGTAAATACAATGCCTTCATTATCGGAAGAAGGTGATAAAAATGACGGTCATGACGACGATGATGTGATTGTATTGGATCCATCCACTGTTAATAAAGAGAGCTTTGGTCGAAAGAGGAAAAGAGAGTCTATGTCTGAAATGCTAAGCTGGCTTACTGGTATTGCTAAGAATCCTTGTGATCCTGCCGTTGGTTCAATGCCCGAAAAGTCAAAGTGGAAATCTTACGGTAGCGAGGAGATCTGGAAACAGGTTTTGCTGTTTCGGCAAGCGACCTTTTTTAGCAGTGAACACGTCAGTTGGCAGGGCCAGAGGATGCATCCTTGTATGTATGATGATCAGGTTGGGGCAAATTACAACCTTAGAGAGAGGTTGAAATGTGACAAGAATTTAACATGTGGTGATGTCTCTTCAAATATGGGAGGAATACAGGGAGGTTCAGAGAGAAATCCATCTCCTCATTCAAAAGTGGAGAAACTGTTACTAGACCAATGTAGCGAAGTGCCCATTCCTGTTGGGCCATCCCATCAAGCTGAAGTGCCTGAATGGACTGGTGTGACAACTGAAAGTGATTCCAAGTGGTTGGGAAGCCAAATATGGCCATCAGCAATGGTAAAGTCCAAAATCATAGAAAGAGATCCTATTGGAGCTGGAAGAAAAGATTCATGTGGCTGTGAAGTACAAGGTTCTGTCGAGTGTGTCCGGTTCCACATTGCTCAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGTGGCTTTTTATCTGTGGAATTTACACAAGACAGGTGAAGAAGTCAGGCGATTGTGGACAGAAGAAGATGAGAAGAAGTTCGAGGATGTGGTGAAATCAAACCCTCCTTCACTTGAAAGATGTTTTTGGGATCAAATTTTCAAATCATTTCCTACAAAGAGCAGGGAAGATTTAGTAAGTTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGGATATCAAAATAGGACTACTCCGGATGACATTGACAGTGATGATGATGAATCAGAATATGGTCCATTGAAGGATTCTTTTGGACATCATACACATAACTCGTGCAACATCACCTTATTATCTCCCAAAAAGCCCAAGACTATGGAACATAGCAAGTGA 1683 0.4141 MMCTGDEPLDLYKLFMVVKEKGGYDAVCKNMLWDLVAEEYGLGLNVGSSVELVYSKHLSTLETWLKNVADSKFPECGLMDDRVSFGKKLMELQTNFLLDIYSEEGEGDEIKTVCDFLDGRKLCGTNRVRGLNPELSGAKKMVDLKTLDLKMNGPSIGNFCSHNFSNNSGDKLDHLSEIKTSAVDVSGEVNTMPSLSEEGDKNDGHDDDDVIVLDPSTVNKESFGRKRKRESMSEMLSWLTGIAKNPCDPAVGSMPEKSKWKSYGSEEIWKQVLLFRQATFFSSEHVSWQGQRMHPCMYDDQVGANYNLRERLKCDKNLTCGDVSSNMGGIQGGSERNPSPHSKVEKLLLDQCSEVPIPVGPSHQAEVPEWTGVTTESDSKWLGSQIWPSAMVKSKIIERDPIGAGRKDSCGCEVQGSVECVRFHIAQKRAKVKLELGVAFYLWNLHKTGEEVRRLWTEEDEKKFEDVVKSNPPSLERCFWDQIFKSFPTKSREDLVSYYFNVFLLQRRGYQNRTTPDDIDSDDDESEYGPLKDSFGHHTHNSCNITLLSPKKPKTMEHSK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151054g00009 560 SMART sant 452 505 IPR001005 -
Stsc151054g00009 560 MobiDBLite consensus disorder prediction 192 212 - -
Stsc151054g00009 560 MobiDBLite consensus disorder prediction 198 212 - -
Stsc151054g00009 560 Pfam ARID/BRIGHT DNA binding domain 5 61 IPR001606 GO:0003677
Stsc151054g00009 560 SUPERFAMILY ARID-like 5 74 IPR036431 GO:0003677
Stsc151054g00009 560 SMART bright_3 2 67 IPR001606 GO:0003677
Stsc151054g00009 560 SMART ELM2_2 357 407 IPR000949 -
Stsc151054g00009 560 Gene3D - 1 74 IPR036431 GO:0003677
Stsc151054g00009 560 SUPERFAMILY Homeodomain-like 455 503 IPR009057 -
Stsc151054g00009 560 CDD ARID 5 62 - -
Stsc151054g00009 560 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 2 554 - -
Stsc151054g00009 560 MobiDBLite consensus disorder prediction 514 560 - -
Stsc151054g00009 560 CDD SANT 456 503 IPR001005 -
Stsc151054g00009 560 Pfam Myb-like DNA-binding domain 455 502 IPR001005 -
Stsc151054g00009 560 ProSiteProfiles ARID domain profile. 1 66 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151054g00009 Stsc-Chr151054 67418 70548 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc151054g00009 ARID 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151054g00009 - - adu:107485800 657.521