Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151054g00005 ATGGGAGGTTGCTGTTGTTCTGCAAGAAAACCTCATCTGCATGGAACCCCAGTTTATTACTATTGCCCGCCATCTTTGGAGGAGCGTGAGTTGTTAACCTCTAATGATGCTACTGCTTCCTCACTCACTGCTGGATTGCTGATTGGCTTAAACCTGGATGCATCCACACCTGATACCTTCCAGCCTCCACCTGCGCCTCTGCCTTATGATGTGGTCTTAGGAGGTTCTGCATCAACGGATTCCGAGTCTTTCAGAGAAACAGTTAGTGGTAGTAGTTTCGAGGCTTTAATTGCACGAGAAGATCTCGAAGAAGCAAATAGTAAAGCTCAAGCAAATTCTGCACCTATATCTCCAAAGAAGGCAGAGTTATCAAAATCAAATCAGACTCAAGTACTACTTTCGGAAGAAGAGGATGTTTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCCAAAAATCTGACGAAATGTGAGCACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCGATATGTGATCAGGAGATGATATTTTGA 561 0.4349 MGGCCCSARKPHLHGTPVYYYCPPSLEERELLTSNDATASSLTAGLLIGLNLDASTPDTFQPPPAPLPYDVVLGGSASTDSESFRETVSGSSFEALIAREDLEEANSKAQANSAPISPKKAELSKSNQTQVLLSEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151054g00005 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 185 IPR013083 -
Stsc151054g00005 186 Pfam Ring finger domain 139 180 IPR001841 -
Stsc151054g00005 186 SMART ring_2 140 180 IPR001841 -
Stsc151054g00005 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 185 - -
Stsc151054g00005 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Stsc151054g00005 186 CDD RING-H2_AIRP1-like 136 184 - -
Stsc151054g00005 186 SUPERFAMILY RING/U-box 133 184 - -
Stsc151054g00005 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151054g00005 Stsc-Chr151054 42295 45908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151054g00005 1 186 C3H Transcription Factor Family AT4G00335 56.989 1.79e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151054g00005 - - gmx:100792561 323.168