Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151054g00003 ATGGGCTTCCCCGTTGGCTACACCGAAGTCCTCGTCCCAAACATCTTCCTCCGCCTCCTCACCTTCCTCGCCGCCCTCCGAAACCTCGTACTCTCCCTCTTCCGCCTCCTCGGCATCTCCGAACTCCTAGACACCACTCCCACCGACACCTACCCTCTCTCTTGGGCCCAGGCCCACCAGGCCCAATTCAACCGGCCCAACACCACTACCACCACCACCACCACTACAATCCCTATCCCATCCCTCTCCGCTATCCTCATCCGCGAATTCCTCCCCGTCATGAAGTTCAGCGACCTAGCCGGCGCCGGAGATTTCATCCCGGCGACGACGGAGAACGGATGCGCGGTTTGCCTGAGCGAATTCTCCGGGGAAGACGAGATCAGGTGTATGGCGAACTGCAGACACGTGTTCCATAGCGGTTGCGTGGACCGTTGGATGGACCATGATCAGAGGACTTGCCCTCTCTGTAGAACTCCTTTCGTTCCTGATCACAAAGTGAACGAATACAATCAACGCCTCTGGGAAGCTTCCGGTGCAACTGAATTCTACGCCGATTAA 558 0.5771 MGFPVGYTEVLVPNIFLRLLTFLAALRNLVLSLFRLLGISELLDTTPTDTYPLSWAQAHQAQFNRPNTTTTTTTTTIPIPSLSAILIREFLPVMKFSDLAGAGDFIPATTENGCAVCLSEFSGEDEIRCMANCRHVFHSGCVDRWMDHDQRTCPLCRTPFVPDHKVNEYNQRLWEASGATEFYAD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151054g00003 185 ProSiteProfiles Zinc finger RING-type profile. 114 157 IPR001841 -
Stsc151054g00003 185 Pfam Ring finger domain 114 157 IPR001841 -
Stsc151054g00003 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 166 IPR013083 -
Stsc151054g00003 185 PANTHER RING ZINC FINGER PROTEIN-RELATED 25 176 - -
Stsc151054g00003 185 SMART ring_2 114 156 IPR001841 -
Stsc151054g00003 185 SUPERFAMILY RING/U-box 99 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151054g00003 Stsc-Chr151054 28864 30110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151054g00003 1 180 C3H Transcription Factor Family AT1G63840 45.304 1.59e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151054g00003 K16281 - gmx:100813224 194.126