Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151053g00023 ATGGATAGGTGGGATCTTCAACTTGGTCTCGCTCTTCCAACCAATTCAACATCACACCTACTTGTTCCTCATGGTGAAGAGGAGGAGGAGGAGGAGCAACAAGAGGTTACAACAGATCCCACCACTCTCTCTCTCCTTCCATTAACCCCTCATCAGGATGAGGATGAGGATGCCCACCCTATCATCACCAAGAGGGAAAGAAGTGAAAGCGGTGAGAATGAGGTGGTGGGTTGGCCTCCCCTGGCGAATAAGAAAGTGGTGGTGCGTGGTAGTAGGAGGATGTACGTGAAGGTGAAGATGGAAGGTGTAGGGATTGGAAGAAAGATTGATCTGAGCATGCACCATTCATTTCACACCCTAAACCATGCCTTGCTTCACATGTTTGGAAAATCACATCATCACCAATCATATCAACTCACTTATCAGGACCAACATGGCCAATGGCTTCGACCCACCAAACATCTCCCATGGACAACTTTCCTCAACTCTGCACACCGTCTCAAACTCCTCAGGACTTCCACCACCCCATAA 531 0.4859 MDRWDLQLGLALPTNSTSHLLVPHGEEEEEEEQQEVTTDPTTLSLLPLTPHQDEDEDAHPIITKRERSESGENEVVGWPPLANKKVVVRGSRRMYVKVKMEGVGIGRKIDLSMHHSFHTLNHALLHMFGKSHHHQSYQLTYQDQHGQWLRPTKHLPWTTFLNSAHRLKLLRTSTTP 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151053g00023 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 174 IPR003311 GO:0005634|GO:0006355
Stsc151053g00023 176 ProSiteProfiles PB1 domain profile. 93 174 IPR000270 GO:0005515
Stsc151053g00023 176 SUPERFAMILY CAD & PB1 domains 91 168 - -
Stsc151053g00023 176 Pfam AUX/IAA family 57 131 IPR033389 -
Stsc151053g00023 176 Pfam AUX/IAA family 134 173 IPR033389 -
Stsc151053g00023 176 Gene3D - 89 175 - -
Stsc151053g00023 176 MobiDBLite consensus disorder prediction 15 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151053g00023 Stsc-Chr151053 158638 159279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151053g00023 62 170 B3 DNA Binding Superfamily AT4G30080 30.275 4.44e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc151053g00023 AUX_IAA 5.5e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151053g00023 K14484 - aip:107640278 144.05