Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151053g00020 ATGTTCTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCTCTGGACTCTGAATCCATCTTCTCCGAGATCGACGACGATTTGAGCCCTAAATTCAGGGAGCGGAGAGGGGTTCTCCACTTGTTCCGAAGCTCCTCTCACTCCTCCATCCCAAGCCCTAGCTCTCGCTCTTCTCTCGTCTTCATTCTCGCCGTTCCTAATTACCTCTCCTTCGATGACCTCATTCGCTGGTGCGGCACCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGAATGATGGGATGGAAGATCGCTACAGTGTGCTGATTGAACTTCAGGATCAGCGTGCAGCTGATGCGTTTTACACCAATTTCAATGGCAAGACATTTTCTCCTGGAGAGGCAGAGGTGTGCCATATCCTGTTTTTGGTTTCTGTGGAATACTCAGAATGTGCAGATATTGCTGGGACTCCTCCTGATGGATGCACTGAAATACCAACTTGCCCTGTTTGCCTCGAGAGATTGGACCCGGATAGAAGTGGAATACTCACTACACTTTGCGATCACTCCTTTCAATGCCCTTGTGTTTCGAAGTGGACATACTTATCTTGCCAGGTCTGTCGATTCTGTCAACAGCAAGATGAGAAGCCAACTTGTTTTGTTTGTGGAACATTAGACGATTCCTGGGTTTGTATGATTTGCGGATTTGTTGGATGTGGAAGATATAAGGAAGGACATGCTATCCAGCATTGGAAAGACACCCAGCACTGTTATTCTCTTGATTTCAAAACACAGCAAATATGGGATTATGTGGGCGACAGTTATGTCCATAGGCTGAACCAGAACCAATCCAGACTTGATGGCAAGTTCGAGGGAATGAATTACCGGTGTAGTGTACTGAACGGAGATTGTGATGAGTGCGAATGTCATGATGATTTAGAAATTGATGGAGCCCTATACAACAGCAAAGTCGAGGCGATTTTGGATGAATACAACCGTCTTCTAACATCTCAGCTGGAAACACAAAGACAATATTATGAATCTTTGCTAGCTGAGGCAAAAAGCAAAGTGGACAGTTCCGTCTCTGAAGCAGTGGAGAAAGCAGTAACTTCCGGAATTCAGGACATGCAAGATAAACTGGAGAAGTGTACATTAGAGAAAAATAGTATTGCTGAGGTCAATAAGAAATACATACAAAATCAACAGCTTTGGCGAAACAAAGTTAAAGCAGCTGAAGAGAGGGAAGCTGCATTAGCAAAATCCATGAACCAAAAGATTGCTGATCTGGAGGAACAGATTAGGGATGTCAAGATATTTGTACAAGCACAAAAAACAATTGATAAGATGACGGATTCAAAGGGAATCAAGGACGGAACAGTGTTACCGGTGGCTTATGAGCAATCTACTCCCAGCAACAGTAAGAAAAACAGAAAGTCTGGTCGGAGGCGAAACTAG 1437 0.4516 MFFLRVHSVDSEQPLDSESIFSEIDDDLSPKFRERRGVLHLFRSSSHSSIPSPSSRSSLVFILAVPNYLSFDDLIRWCGTHLHHLHRLLFIRNDGMEDRYSVLIELQDQRAADAFYTNFNGKTFSPGEAEVCHILFLVSVEYSECADIAGTPPDGCTEIPTCPVCLERLDPDRSGILTTLCDHSFQCPCVSKWTYLSCQVCRFCQQQDEKPTCFVCGTLDDSWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQNQSRLDGKFEGMNYRCSVLNGDCDECECHDDLEIDGALYNSKVEAILDEYNRLLTSQLETQRQYYESLLAEAKSKVDSSVSEAVEKAVTSGIQDMQDKLEKCTLEKNSIAEVNKKYIQNQQLWRNKVKAAEEREAALAKSMNQKIADLEEQIRDVKIFVQAQKTIDKMTDSKGIKDGTVLPVAYEQSTPSNSKKNRKSGRRRN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151053g00020 478 Pfam BRCA1-associated protein 2 53 148 IPR011422 -
Stsc151053g00020 478 Coils Coil 388 433 - -
Stsc151053g00020 478 SMART Zf_UBP_1 212 261 IPR001607 GO:0008270
Stsc151053g00020 478 SUPERFAMILY RING/U-box 178 277 - -
Stsc151053g00020 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 290 IPR013083 -
Stsc151053g00020 478 PANTHER BRCA1-ASSOCIATED PROTEIN 29 477 - -
Stsc151053g00020 478 CDD RING-H2_BRAP2 160 203 IPR047243 -
Stsc151053g00020 478 FunFam Zinc finger (Ubiquitin-hydrolase) domain-containing protein 184 292 - -
Stsc151053g00020 478 Pfam Zn-finger in ubiquitin-hydrolases and other protein 198 273 IPR001607 GO:0008270
Stsc151053g00020 478 ProSiteProfiles Zinc finger RING-type profile. 162 202 IPR001841 -
Stsc151053g00020 478 ProSiteProfiles Zinc finger UBP-type profile. 196 291 IPR001607 GO:0008270
Stsc151053g00020 478 MobiDBLite consensus disorder prediction 445 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151053g00020 Stsc-Chr151053 131574 135311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151053g00020 146 248 C3H Transcription Factor Family AT2G39100 28.155 9.68e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151053g00020 K10632 - gmx:100807397 709.138