Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151053g00009 ATGATGTCGAGCTGCAGCATGGATGTTGTACCTGAGCAACTGTGCTACATCCCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCTTGTTTGAGATGGTAACGGTTCGATGCGGTCACTGCACGAATCTATGGTCCGTTAACATGGCTGCTGCCTTTCAATCACTCTCATGGCAAGATCTTCATCATCATCAGGGGGGTGGGCAGTGCAATCAGGATTACAGGATGATTGAGAGTAATATGAATAATATAATTATTAATGGTGGCTCTTCTTCTTCTTCATCTTCGAAATGCAACAACAATAACAACAACATTGGTAGCAGGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCATCAGGAAAGGGCTGTCAACCGCCCACCTGAAAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAATAAAATGGAGAATGCCACTGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTTATGAATAAATGA 651 0.4378 MMSSCSMDVVPEQLCYIPCNFCNIVLAVSVPCSSLFEMVTVRCGHCTNLWSVNMAAAFQSLSWQDLHHHQGGGQCNQDYRMIESNMNNIIINGGSSSSSSSKCNNNNNNIGSRLASMRAPTNHVTHQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQANKMENATEKHLMSRAAPALMNK 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151053g00009 216 Gene3D High mobility group box domain 123 206 IPR036910 -
Stsc151053g00009 216 CDD HMG-box_SF 140 176 - -
Stsc151053g00009 216 Pfam YABBY protein 11 186 IPR006780 GO:0007275
Stsc151053g00009 216 SUPERFAMILY HMG-box 129 179 IPR036910 -
Stsc151053g00009 216 PANTHER PROTEIN YABBY 6-RELATED 2 198 IPR006780 GO:0007275
Stsc151053g00009 216 FunFam axial regulator YABBY 5-like 124 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151053g00009 Stsc-Chr151053 71345 73925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151053g00009 12 194 C2C2-YABBY Transcription Factor Family AT2G26580 67.760 9.21e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc151053g00009 YABBY 3.6e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151053g00009 K25796 - gmx:100804731 308.531