Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00032 ATGGAGGATAAATATATGTTATCTTCTAAAATTGTGACTTTCTTGTCCTTGCTTGTGAATCTGCTGAGTGATTTTGTTGATTGCGTGTTCAAATTAGAAATTACTGATTCAAATGATGACTCACAGGAAGGATCTGCGAACATAACACCAAATATTGGCATGCCAAAGGAATCTGAGTCACATGATTCTCTGGTTGCCGGAGGAACTGAAGATCTAGTTACACCTTGCATTTCAAATGGATCAGCCAATGTTAATCCTCCTTCTTCCTCGCCACCTACTGAAATTTCAGTTTCTCTACCCTGCCCGGGTGGTCTGGATGACGCTGCACCAGTTCCCCAGGACGTTGGAAATAATGATTGCTTAGCAAGTGACGACAGGAGGGAGCTAGTGGATCCTATATCTACGAATTCACGTAGTTTAGTGACTGCTCCAAAGAATCAGCTTACAACTAATGCCATTATGACTGTTCACAATGTTAATGACATAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATAACATTAATGATGATTTCCCACCATCCTTTCATTACATACCCCGAAACATTGTATTCCAAAATGCTTATGTTAATATTTCTCTATCTTGTATTGGGAATGAAGATTGCTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTTCTGAATCATGTTCTTGTGCAAATAAAACTGGTGGTGGATTTGCCTACACTGCAGAAGGTCTACTGAAGGAAGAGTTCTTGGATGAGTGCATTGCCATCAGCTGCAACCCTAAGAATTGTTTCTATTGTGAAGACTGCCCAGTTGAAAGATCAAAGAATGATGATTGTTCAGAACCATGTAAAGGACACTTAAGGAGGAAGTTTATTAAAGAATGCTGGAGTAAATGTGGCTGTGGTAAAAAATGTGGCAATCGGGTTGTCCAACGAGGAATAAATTGCAACTTGCAGGTGTTTTTAACTTCTGAAGGAAAAGGTTGGGGTCTTCGGACATTAGAGGACCTTCCCAAAGGGGCATTTGTATGTGAATTTGTTGGAGAAATTTTAACCGTCAAAGAATTGCATGAGAGGAGCCTAAAATATCCCAAAAACAGGAAATATACATACCCAATTCTATTGGATGCAGATTGGGAATCAGGAGGCGTGAGGGACAAAGAAGCTCTTTGCTTGTATGCAGCATCTTATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCTAACTTGGTTGAGATCCCAGTTGAAATTGAGGGCCCAGATCATCACTACTATCATTTCGCCTTATTCACATCCAGAGAAATAGCAGCACAGGAGGAGCTTACTTGGGATTATGGCATCAACTTTGATGACGATGATCAACCTGTTGAACTGTTTGAGTGCAAATGTGAAAGTAAATTCTGCAGGAATATGAAGCGATCAAGTAGTAAGTTCAATCATCTATTTATGGTAACGTGCAAGAATTTGTTTCTTTTTCAACATGAAAATTGTGACTCTTCACCTTTTCTGGAGAGCTTCTCTGTGTGGCCCCGTGGCCGCCTCCACTTTTAG 1557 0.4008 MEDKYMLSSKIVTFLSLLVNLLSDFVDCVFKLEITDSNDDSQEGSANITPNIGMPKESESHDSLVAGGTEDLVTPCISNGSANVNPPSSSPPTEISVSLPCPGGLDDAAPVPQDVGNNDCLASDDRRELVDPISTNSRSLVTAPKNQLTTNAIMTVHNVNDITKGEEKVKISWVNNINDDFPPSFHYIPRNIVFQNAYVNISLSCIGNEDCCSTCMGNCVLSSESCSCANKTGGGFAYTAEGLLKEEFLDECIAISCNPKNCFYCEDCPVERSKNDDCSEPCKGHLRRKFIKECWSKCGCGKKCGNRVVQRGINCNLQVFLTSEGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERSLKYPKNRKYTYPILLDADWESGGVRDKEALCLYAASYGNAARFINHRCLDANLVEIPVEIEGPDHHYYHFALFTSREIAAQEELTWDYGINFDDDDQPVELFECKCESKFCRNMKRSSSKFNHLFMVTCKNLFLFQHENCDSSPFLESFSVWPRGRLHF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00032 518 ProSiteProfiles SET domain profile. 315 448 IPR001214 GO:0005515
Stsc151052g00032 518 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 135 478 - -
Stsc151052g00032 518 SMART preset_2 159 299 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151052g00032 518 SMART set_7 315 454 IPR001214 GO:0005515
Stsc151052g00032 518 Pfam Pre-SET motif 162 307 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151052g00032 518 Pfam SET domain 327 448 IPR001214 GO:0005515
Stsc151052g00032 518 MobiDBLite consensus disorder prediction 39 56 - -
Stsc151052g00032 518 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 62 505 IPR025776 -
Stsc151052g00032 518 ProSiteProfiles Pre-SET domain profile. 201 312 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc151052g00032 518 Gene3D SET domain 142 458 IPR046341 -
Stsc151052g00032 518 MobiDBLite consensus disorder prediction 78 96 - -
Stsc151052g00032 518 CDD SET_SETDB-like 183 448 - -
Stsc151052g00032 518 MobiDBLite consensus disorder prediction 78 116 - -
Stsc151052g00032 518 MobiDBLite consensus disorder prediction 38 63 - -
Stsc151052g00032 518 SUPERFAMILY SET domain 169 471 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00032 Stsc-Chr151052 182266 185013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00032 291 473 C2H2 Transcription Factor Family AT2G23740 40.000 2.30e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc151052g00032 Pre-SET 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00032 - - gmx:100809678 642.884