Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00031 ATGCACAAAAACATGAGACATTCTGACATTACTCGAAGTATAATGCTCTTTATTGATTTAAAGCCGAAACACCCGATTTTAGGGTTTGTGTTTGTGATACCAACAATGGCGTCCAAGAGAGGTCGCGGTGGAAATGCGGGTAACAAGTTCAGGATGTCGCTGGGTCTTCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACTGGTGCAAAGAACCTCTACATCATCTCCGTTAAGGGGATCAAGGGCCGCCTTAACCGTTTGCCTTCCGCTTGCGTCGGCGACATGGTGATGGCCACCGTCAAGAAGGGGAAGCCTGACCTCCGTAAGAAGGTGCTGCCAGCTGTCATCGTCCGCCAGCGCAAGCCCTTCCGCCGAAAGGACGGTGTTTACATGTACTTCGAAGATAATGCTGGAGTCATTGTGAATCCCAAGGGTGAAATGAAAGGTTCTGCTATCACTGGTCCAATTGGTAAGGAGTGTGCTGATCTATGGCCTAGGATTGCAAGCGCAGCTAATGCTATTGTTTGA 531 0.5047 MHKNMRHSDITRSIMLFIDLKPKHPILGFVFVIPTMASKRGRGGNAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPFRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00031 176 Hamap 50S ribosomal protein L14 [rplN]. 55 176 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc151052g00031 176 Gene3D Ribosomal protein L14 37 176 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc151052g00031 176 SUPERFAMILY Ribosomal protein L14 47 176 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc151052g00031 176 ProSitePatterns Ribosomal protein L14 signature. 115 141 IPR019972 -
Stsc151052g00031 176 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 56 175 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc151052g00031 176 SMART Ribosomal_L14_2 55 176 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc151052g00031 176 FunFam 60S ribosomal protein L23 37 176 - -
Stsc151052g00031 176 Pfam Ribosomal protein L14p/L23e 58 176 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00031 Stsc-Chr151052 179202 181501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00031 38 176 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.122 1.43e-96 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00031 K02894 - aof:109845384 278.485