Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00029 ATGAAAGCACACCCTGCAAAGCAACTCAATAACATGGGGATGTCTGGAGCACTTCCTTCCTCGTTGGCCAGTCTTCCAACGTCTCTGGATGATACATACTCCAAATTATCTGATTCACAGCCCGCTTTTGTGGAAAACGAGCTTACAACAAGAACTTTTACTCATTCAAGCTCTAGCGGAGTAGTTGGGCCTATGTTTTCTTCTTCTCCGGGATATTCAACCGATCTTCATCACTCATCCCTTTCACCTCATGATAAACAATCTAAAAATGCTCATTTTTTGTCACAGACATTGAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAATGGACCAATACCTTCAACAACACCAACCCATTATTCCAAAGGAGACAGTGCTTCCTGGCATGCAGATTCCCTGAATAGCTTTCTTGATTTGCCCACCAGTACCTCCATTGATAATAGTCAAGTAGAGAGCAGTACCTGCAATATTATGGCATCCGAGGATTATGCTAAGCAAAATAATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGAATGATATTCTTGTTGACAACATTCAAGATCTTGAACCAAAGGTGGTGTTCCAGGTTCCAAAAACATCTTCACAATTTTCAGCAGGCCATCAACAACTGCCTGCTTCATCTGGAGAAAATCGTGTTGGTGCTATGCCATCTTCCTCAGCCAATTCTGCACCTGCAAAGCCCCGGATGCGTTGGACACCCGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAATCAACTAGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTTCTGAAACTCATGAAAGTTGAAGGACTAACTATATACCATGTTAAAAGTCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGATCTTCTGAGAGAAAACTAGGTACCATTGAAGAGATGCCATCTTTAGATTTAAAGACTGGTATTGAAATCACTGAAGCTCTGCGAATGCAGATGGAGGTTCAGAAGCGCTTGCACGAGCAGCTTGAGATTCAAAGAAATCTACAGTTGCGTATAGAAGAACAAGGAAGGTATCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGTGGCATTGAACCATTCAAGGCATCATCATCTGCCATTGAGAGTACATCTGCAGTGTCCTCTGATGCCATGAAAGATTCACCTGCCAAAAGCGAAATGGAAGCCACCCAAATGGATCTTGGCAGTTCAGGGCCTGATCAAGCTAATGGCAATGCCGCAGCTGAGAAAAAATCCCAGGAAGTGAGTGGGAAGCAAGATGCTCGGGAAGATCCAAAGCAACACGCTTCTGAAAGTGAAGATAGTGTTCAACCCCCAAAGCGTCCAAGGACAGATGGGTGA 1413 0.4374 MKAHPAKQLNNMGMSGALPSSLASLPTSLDDTYSKLSDSQPAFVENELTTRTFTHSSSSGVVGPMFSSSPGYSTDLHHSSLSPHDKQSKNAHFLSQTLSNMASLPLSYSSNNGPIPSTTPTHYSKGDSASWHADSLNSFLDLPTSTSIDNSQVESSTCNIMASEDYAKQNNWQEWADQLISDDDTLTSNWNDILVDNIQDLEPKVVFQVPKTSSQFSAGHQQLPASSGENRVGAMPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSERKLGTIEEMPSLDLKTGIEITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGGIEPFKASSSAIESTSAVSSDAMKDSPAKSEMEATQMDLGSSGPDQANGNAAAEKKSQEVSGKQDAREDPKQHASESEDSVQPPKRPRTDG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00029 470 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 220 459 IPR044848 GO:0003700
Stsc151052g00029 470 FunFam Myb family transcription factor 245 303 - -
Stsc151052g00029 470 Pfam Myb-like DNA-binding domain 248 299 IPR001005 -
Stsc151052g00029 470 NCBIfam myb-like DNA-binding domain, SHAQKYF class 246 300 IPR006447 GO:0003677
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 392 470 - -
Stsc151052g00029 470 Gene3D - 245 304 - -
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 216 247 - -
Stsc151052g00029 470 SUPERFAMILY Homeodomain-like 244 300 IPR009057 -
Stsc151052g00029 470 Pfam MYB-CC type transfactor, LHEQLE motif 331 378 IPR025756 -
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 414 436 - -
Stsc151052g00029 470 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 303 IPR017930 -
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 216 245 - -
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 300 320 - -
Stsc151052g00029 470 MobiDBLite consensus disorder prediction 437 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00029 Stsc-Chr151052 165481 171797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00029 1 469 G2-like Transcription Factor Family AT4G28610 44.885 7.50e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151052g00029 Myb_DNA-binding 8.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00029 - - gmx:100810560 665.996