Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00028 ATGACAACCTTCTTCCAACATTCAATTCTCTTTCAAGTGATTCTTCTTATTATATCTCTCCTTACATTGAACACAACAGCATCACCAAAAACAGAAGCAGAAGCACTTGTCAAATGGAAGAACACACTGTCCCTTCCTCTTCCTTCTTCACTAAACTCATGGTCACTCACCAACTTCAACAAACTTTGCACCTGGGAAGCCATTCTTTGTGACAAATCAAACACAACAATCACACAAATAGACCTCTCTGGTTTCTCCCTCGGTGGCACCCTTGATGCCTTGGCTTTTTCTTCTCTTCCAAACCTCACTCATTTCAACCTCAGTGACAACAACTTCAATGGATCATTGCCATCTTCCATGGGAACTCTCTCCAAGCTTCAATATCTCAGTTTTCACAACAACAGTTTTAGTGGCACCATTCCTTATCATCTCACAAGTCTTCCCAAGGTATGGTACCTTGACTTTGGGTCAAACTATTTTGCATCTGGAAACTGGTCTCAATATTCATGTTTGCCTTCACTAACATACCTTGACTTGGATCTCAATTCATTCACTCCTGAATTTCCAAGCTTTGTGCTCAAGTGTCACAACTTGACTTTCCTTGACCTCTCCCAAAACACTTTCAATGCCACAATACCAGAATCCATGTTTACCAATTTGAGCAAGCTTGAGTACCTTAACCTCACCAACTGTGGTCTGCAAGGACCACTATCATCCAATTTGTCAAAGCTCTCAAATCTCAAAGAACTTCATATTGGAAACAACATGTTTACTGGTCCTATTCCAGCAAACATAGGATTGCTATCCAGCCTTCAGGTTCTTGAGTTGTATAACATTTCAGCCCATGGGGCAATTCCTGCATCATTAGGCCGACTCAAGAAGCTCCAACATCTTGATCTAAGAAACAATTTTTTGAATTCTTCAATTCCTTATGAACTTGGCTTGTGCAGCAATCTAACCTACCTTGCTTTGGCAGGCAATAATCTCACTGGTCCTTTGCCTTTATCATTATCTAATCTCACCAAACTCTCAGAATTGGGATTATCTGAAAATTCCTTTTCTGGTCAAATTTCTGCTTCACTGATCTCTAACTGGACCAAGTTGACATCCCTGCAAATCCAAAACAATAATCTGACAGGAAAAGTTCCCCCAGAAATTGGCTTGCTGAAGAAAATCAATTTTCTCTTTTTGTATAATAACACATTGTCAGGTCCAATACCTGTTGAGATTGGAAACTTGAAGGAAATGATAGAATTAGACCTTTCAGGAAACCAATTCTCAGGTAAGATTCCTCAAACCATTTGGAATCTTACAAATATTACAACCTTGAACCTTTTCTTCAATGAGCTCTCTGGGACTATTCCCAAAGACATTGGAAACTTAAAGTCATTGCAGATTTTTGATGTCAACAACAACAAACTAGATGGAGAGTTACCAGATACCATAGCTCAACTAACTGCTTTAGAGCATTTTTCTGTGTTTAGCAACAGATTCTCTGGCAACATTACCCGAGATTTCGGAAAGTATAGTCCTAACTTGAATACTATCTACCTTTCAAACAACACTTTCTCAGGAGAATTGCCACCTGACCTATGCAATGGTGCTGCTATGTTAAATATTTTGGCAGTCAATAACAACAGCTTTTCCGGGCCTTTGCCGAAGTCCTTGAGAAACTGTTCAAGTCTAGTTAGACTCAGGGTTGATGTTAATCAACTCTCAGGTAACATCACAGAAGCATTTGGGGTTTATAAAAGTCTTGAATTTATCTCACTAAGTGGAAATCACCTTGTTGGTGAGCTTTCTCCAAAGTGGGGTGAATGTGCCAACATAACCAGAATGGAAATGAGCAAAAACAAGCTTTCAGGAAAAATCCCCTCAGAGTTGGGTAGGCTGAGTAGACTAGCATATCTGCGATTGGATTCGAATGAATTCACAGGCAATATCCCACCTGAAATGGGGAACTTAAGCAAGCTCTTTATGTTCAACATGAGCAAGAATCAGATGTCTGGAGAAGTCCCTCAAAGTCTTGGCAGATTGGCTAATCTTAACTTTCTTGATTTATCAGACAACAATTTCAATGGAAGCATCTCCAAAGAGCTTGGTAATCTTCAGAAATTGCTAAGCCTGAATTTAAGTCATAACAATCTATCAGGGGAGATACCATCTGAACTTGGCAATCTGTTAGCACTTCAAATTCTCTTAGACCTCAGCAGCAACTCTCTTGCAGGGGAAATTCCTCAAAACCTTGAAAAGCTTACAAATCTGGAGGTTCTCAATGTCTCACATAACCATTTATCTGGTCAAATCCCAAAGTCTTTGTCCAATATGCTCAGCCTTCAATCAGTGGACTTTTCTTACAACAACTTGACTGGTGCAATCCCAACTGATGATATTTTCCAAACAGCAGATGCTGAATATGAAGGGAACCCGGGTTTGTGTGGTAAGGCAAAAGGCTTACATCCATGCACCACAGACACAAACAAATCTGGAGGAGTTAACAGAAGGGTTCTTCTTGGTGTTCTCATACCAGTTTGTGGATTACTACTGGGGCTGATATGTGTTGCAATCCTTGTATGCCGGCGGCAACCCAAACTCAATGATGAAGAGTCAAGAAGTGCTCAAAATAATGATAAATCTTTCAGCATGGTGTGGGGAAAGGATGGACAATTCACATTCTCTGAGCTTGTCAATGCCACTGATGACTTCAATGACAAGTATTGCATTGGAAAGGGAGGATTTGGAAGTGTTTACAAGGCAGAATTACCTACAGGTCAAGTTGTTGCTGTCAAAAGGCTCATTGTCTCAGATTCCATTGACATTCCAGCAGCGAACCGGCAAAGCTTTGAGAACGAGATAAGAACTCTAACAGGCGTGAGGCACAGGAACATAATCAAGCTCTATGGTTTCTGCTCTAGGAGAAAACAAATGTTCTTGGTTTATGAATATGTAGTCAAAGGAAGCTTGAGAAAAGTGCTTTATGGAGAGGAAGGAACATTGGAGCTAAGCTGGCCAAAGAGAATGCAAGTTGTGCAGGGAATAGCACATGCACTCGCCTACCTACACAGTGATTGTTACCCTCCAGTTGTGCACAGAGATGTAACAATGAATAACATACTATTGGACATGGACTTTGAACCCCGTCTCGCAGATTTCGGCACTGCAAAGCTTTTAAGCTCTGGCACTTCAAGTTGGACCTCAGTTGCTGGCTCTTATGGCTACATGGCTCCAGAGCTAGCACAAACAATGAGGGTCACTGAAAAGTGTGATGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGACAAACCTGTCCTCAAACATGTCCATGTCATCATCAATGGAAGATTCAGAGGTGCTTCTGAGGGATGTGCTAGACCAGAGGCTGCCACCTCCAACAGGCCAATTAGCTGAGGCAGTGGTGTTCACAGTGACCATAGCTTTGGCATGCACACGGTTGGCTCCAGAGTCCAGACCCACAATGCGTTCTGCGGCACAAGAACTGTCAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTCACATGATAACAATGAGCAAGCTTACAGGCTTTCAGAAATAA 3609 0.4151 MTTFFQHSILFQVILLIISLLTLNTTASPKTEAEALVKWKNTLSLPLPSSLNSWSLTNFNKLCTWEAILCDKSNTTITQIDLSGFSLGGTLDALAFSSLPNLTHFNLSDNNFNGSLPSSMGTLSKLQYLSFHNNSFSGTIPYHLTSLPKVWYLDFGSNYFASGNWSQYSCLPSLTYLDLDLNSFTPEFPSFVLKCHNLTFLDLSQNTFNATIPESMFTNLSKLEYLNLTNCGLQGPLSSNLSKLSNLKELHIGNNMFTGPIPANIGLLSSLQVLELYNISAHGAIPASLGRLKKLQHLDLRNNFLNSSIPYELGLCSNLTYLALAGNNLTGPLPLSLSNLTKLSELGLSENSFSGQISASLISNWTKLTSLQIQNNNLTGKVPPEIGLLKKINFLFLYNNTLSGPIPVEIGNLKEMIELDLSGNQFSGKIPQTIWNLTNITTLNLFFNELSGTIPKDIGNLKSLQIFDVNNNKLDGELPDTIAQLTALEHFSVFSNRFSGNITRDFGKYSPNLNTIYLSNNTFSGELPPDLCNGAAMLNILAVNNNSFSGPLPKSLRNCSSLVRLRVDVNQLSGNITEAFGVYKSLEFISLSGNHLVGELSPKWGECANITRMEMSKNKLSGKIPSELGRLSRLAYLRLDSNEFTGNIPPEMGNLSKLFMFNMSKNQMSGEVPQSLGRLANLNFLDLSDNNFNGSISKELGNLQKLLSLNLSHNNLSGEIPSELGNLLALQILLDLSSNSLAGEIPQNLEKLTNLEVLNVSHNHLSGQIPKSLSNMLSLQSVDFSYNNLTGAIPTDDIFQTADAEYEGNPGLCGKAKGLHPCTTDTNKSGGVNRRVLLGVLIPVCGLLLGLICVAILVCRRQPKLNDEESRSAQNNDKSFSMVWGKDGQFTFSELVNATDDFNDKYCIGKGGFGSVYKAELPTGQVVAVKRLIVSDSIDIPAANRQSFENEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVVKGSLRKVLYGEEGTLELSWPKRMQVVQGIAHALAYLHSDCYPPVVHRDVTMNNILLDMDFEPRLADFGTAKLLSSGTSSWTSVAGSYGYMAPELAQTMRVTEKCDVYSFGVVVLEIMMGKHPGELLTNLSSNMSMSSSMEDSEVLLRDVLDQRLPPPTGQLAEAVVFTVTIALACTRLAPESRPTMRSAAQELSATTQACLSEPFHMITMSKLTGFQK 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00028 1202 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 408 506 - -
Stsc151052g00028 1202 FunFam Nuclear pore complex protein NUP107 29 166 - -
Stsc151052g00028 1202 SUPERFAMILY RNI-like 284 598 - -
Stsc151052g00028 1202 FunFam Leucine-rich repeat receptor protein kinase MSP1 865 982 - -
Stsc151052g00028 1202 SUPERFAMILY RNI-like 80 379 - -
Stsc151052g00028 1202 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1028 1040 IPR008266 GO:0004672|GO:0006468
Stsc151052g00028 1202 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 510 826 - -
Stsc151052g00028 1202 Pfam Leucine Rich repeat 703 719 IPR001611 GO:0005515
Stsc151052g00028 1202 CDD STKc_IRAK 908 1177 - -
Stsc151052g00028 1202 FunFam MDIS1-interacting receptor like kinase 2 983 1183 - -
Stsc151052g00028 1202 SUPERFAMILY L domain-like 510 800 - -
Stsc151052g00028 1202 SMART LRR_typ_2 511 534 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 244 268 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 752 776 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 413 437 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 196 219 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 340 364 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 461 485 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 292 316 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 171 195 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 631 655 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 99 123 IPR003591 -
Stsc151052g00028 1202 SMART LRR_typ_2 703 727 IPR003591 -
Stsc151052g00028 1202 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Stsc151052g00028 1202 SUPERFAMILY Protein kinase-like (PK-like) 881 1177 IPR011009 -
Stsc151052g00028 1202 Gene3D Ribonuclease Inhibitor 189 409 IPR032675 -
Stsc151052g00028 1202 Gene3D Ribonuclease Inhibitor 485 825 IPR032675 -
Stsc151052g00028 1202 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Stsc151052g00028 1202 FunFam MDIS1-interacting receptor like kinase 2 169 362 - -
Stsc151052g00028 1202 Gene3D Transferase(Phosphotransferase) domain 1 984 1189 - -
Stsc151052g00028 1202 Pfam Leucine Rich Repeat 754 775 IPR001611 GO:0005515
Stsc151052g00028 1202 Pfam Leucine Rich Repeat 294 309 IPR001611 GO:0005515
Stsc151052g00028 1202 PANTHER LEUCINE RICH REPEAT KINASE 2 471 1189 - -
Stsc151052g00028 1202 ProSiteProfiles Leucine-rich repeat profile. 294 316 IPR001611 GO:0005515
Stsc151052g00028 1202 PRINTS Leucine-rich repeat signature 752 765 - -
Stsc151052g00028 1202 PRINTS Leucine-rich repeat signature 706 719 - -
Stsc151052g00028 1202 ProSiteProfiles Protein kinase domain profile. 902 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151052g00028 1202 ProSitePatterns Protein kinases ATP-binding region signature. 908 930 IPR017441 GO:0005524
Stsc151052g00028 1202 Gene3D Ribonuclease Inhibitor 414 484 IPR032675 -
Stsc151052g00028 1202 Gene3D Phosphorylase Kinase; domain 1 864 982 - -
Stsc151052g00028 1202 Pfam Protein kinase domain 904 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00028 Stsc-Chr151052 158686 162472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00028 14 625 Receptor kinase-like Gene Family AT4G08850 33.438 6.34e-77 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151052g00028 Pkinase 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00028 - - gmx:100809137 1625.53