Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00016 ATGGATAGCTCACACCCACACCAACACCAACACCCCCGTGAATTGACTTTGTTACCCTCCGGGGACGTCAAAGAAGTCGATTTCTTCGCATCATCCTCTGCTGCCGTTCAACATGATGACCCTCATCATCCCCTCGTAAACACTGGCCTCAATTTAACGTGTGCTACCACTGGAATTTCAACTTCAACTGGATCACCTAATCCTGAAAATACTGAATCCGAGAAGAAAATAGTGGAAAGTGAATTACGGAGACTGCAAGAAGAGAATCGGAAGCTGAGGAGTATGGTGGATCAGATCGCCAAAAGCTATAGCCAACTGCAGGCACAGCTCTTCATGGCTCTGCAGAAACAAAAGCCTCCTAGTCATCTTCAGAATAATAATAATGGGATGATAAGTGGAGAAAAAGATGCGGAGGGAGATGGAAGGGCGAAAGTAGAGATGAAGAAAAGTAATGATGGTTCGGTTTCTGGTGATGATGATAATAATAAGAAAGAGAGAGAGGTATCAGCATCAAAGAATAATAACGCGGAGGAGGTAATGTCAAAGAAACATGATCATGATAATGAAGAAGAAGAAGATGATCATTTGACAAAGCTTCATCTGGGAAAGCAGGTAGATGAAGACGCCCTTGAGCGATCTTCTTCTCAGAGTTGGGGTTCATGCAAGACTCCCAATTTATTAGAAGAACCCAAACTTCCTCCTCCTTCTTCTTCTGACCTTCCTTTCAGGAAAGCCAGGGTTTCAGTGCGTGCAAGATCAGAAGCTCCTCTGATTAGCGATGGATGCCAATGGAGGAAATACGGACAAAAAATGGCAAAAGGAAACCCCAGTCCACGTGCGTACTACCGGTGCACCATGGCTGCTGGATGCCCAGTTCGCAAGCAGGTTCAAAGATGCGCTGAGGACACTACAGTTTTAATAACAACCTATGAAGGTAACCACAACCACCCTCTTCCTCCGGCTGCCACCGCCATGGCCAACACCACTTCAGCCGCAGCAGCCANNNNNNNNNNATCATCCTCCTCCAAAGAAGCCCTATCAGGAGGAGCAGGAGGAGGGTACTTCTCTTCAATGCCGTACACATCAATGGCCACACTATCAGCTTCAGCGCCATTCCCCACCATCACTCTCGACCTCACGCACAACCACCCCAACGCACTCCAACTCCACCGTGTCCCTCCTCCTGCAGCTCCTGTTACGTTCCCTCTTCCATTGCATACAGTTACTCCACATCATCATCAGCTTCTAGGGCATCCATTCTTAATCTCTCAACTCCATCACCACAAGCTGATGCCTCCTTCTTTGGTTCATCGACAACCACCACAGCCTTCCAATAATAATAATCCGTCTTCTATGGTGGAGACAGTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACCGCGGCCGTGGCTGCCGCACTCTCATCAATCATTGGAGCACAAAGAGGAGGAGGAGGTGATGGTGGAGGTGGAAGTGGTGCTATAATTCAGCCTAATAATGGTATTTCAGTGTCACCAAATGGGTCACCCCAACTTCCTCAATCATGTACTACATACTCTACCAACTAG 1569 0.4729 MDSSHPHQHQHPRELTLLPSGDVKEVDFFASSSAAVQHDDPHHPLVNTGLNLTCATTGISTSTGSPNPENTESEKKIVESELRRLQEENRKLRSMVDQIAKSYSQLQAQLFMALQKQKPPSHLQNNNNGMISGEKDAEGDGRAKVEMKKSNDGSVSGDDDNNKKEREVSASKNNNAEEVMSKKHDHDNEEEEDDHLTKLHLGKQVDEDALERSSSQSWGSCKTPNLLEEPKLPPPSSSDLPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPSPRAYYRCTMAAGCPVRKQVQRCAEDTTVLITTYEGNHNHPLPPAATAMANTTSAAAAXXXXSSSSKEALSGGAGGGYFSSMPYTSMATLSASAPFPTITLDLTHNHPNALQLHRVPPPAAPVTFPLPLHTVTPHHHQLLGHPFLISQLHHHKLMPPSLVHRQPPQPSNNNNPSSMVETVSAAIASDPNFTAAVAAALSSIIGAQRGGGGDGGGGSGAIIQPNNGISVSPNGSPQLPQSCTTYSTN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00016 522 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151052g00016 522 Coils Coil 68 102 - -
Stsc151052g00016 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 69 481 IPR044810 GO:0003700
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 496 522 - -
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 433 453 - -
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 113 132 - -
Stsc151052g00016 522 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 479 522 - -
Stsc151052g00016 522 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 135 210 - -
Stsc151052g00016 522 FunFam probable WRKY transcription factor 31 243 320 - -
Stsc151052g00016 522 SUPERFAMILY WRKY DNA-binding domain 251 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc151052g00016 522 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc151052g00016 522 MobiDBLite consensus disorder prediction 113 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00016 Stsc-Chr151052 95391 98757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00016 71 478 WRKY Transcription Factor Family AT4G04450 39.573 7.86e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc151052g00016 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00016 - - gmx:100783661 421.394