Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00014 ATGGGAAGAAAAGCTGCTACTACTTGTTCCTCCTCCTCTAACAACCACCACCACCTTCTCCTTTCAACTAATTCTTCCTTGAATCTTAGGCTTGCACTCGGCACTCATCATCATCATCAACATCAACAACATAATAATGATAATGAAGAATATTGTGGTGGTGGCACCCTGTTTGTGAAGGTGTACATGGAAGGCATTCCTATTGGGAGGAAACTCAACATATTAGCACATGGAAGCTACCATGACCTTGTTAACACACTTGAGAACATGTTCGACACCACCATTCTCTGGGGTCGTGACATGGATGAAGTTGTTGTTCATCCTGGACAGAGATGCCATGTCCTCACCTATGAAGATGAAGAAGGAGATCTTGTTATGGTTGGCGATGTTCCTTGGGAGATGTTTGTTTCAACTGTAAAGAGGTTGAAGATCACAAGGGTAGATACATTTGCTTCTTGA 459 0.427 MGRKAATTCSSSSNNHHHLLLSTNSSLNLRLALGTHHHHQHQQHNNDNEEYCGGGTLFVKVYMEGIPIGRKLNILAHGSYHDLVNTLENMFDTTILWGRDMDEVVVHPGQRCHVLTYEDEEGDLVMVGDVPWEMFVSTVKRLKITRVDTFAS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00014 152 Gene3D - 51 152 - -
Stsc151052g00014 152 ProSiteProfiles PB1 domain profile. 56 149 IPR000270 GO:0005515
Stsc151052g00014 152 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 147 IPR003311 GO:0005634|GO:0006355
Stsc151052g00014 152 Pfam AUX/IAA family 37 146 IPR033389 -
Stsc151052g00014 152 SUPERFAMILY CAD & PB1 domains 49 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00014 Stsc-Chr151052 79666 80309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00014 60 144 B3 DNA Binding Superfamily AT4G23980 36.047 7.03e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc151052g00014 AUX_IAA 5.9e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00014 K14484 - gmx:100783140 158.688