Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151052g00010 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAGGGTCTATGGTCTCCTGAGGAGGATGAAAAGCTTCTCAGGCACATCACCAAGTATGGTCATGGATGCTGGAGCTCTGTTCCAAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTAAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTCTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGCATAGACCCTGTGACACACAAGCCATTTTCTGAGATTCAGAATAATAATAATAATAATAATGGATTAGAGGAGAAGAGCCAGGGGCAAGGGCAAGAGAAAGCATTGTCCAATGATAATGAATTGAACTTGTTGAGATCAGAGAGTTCTAATAAGTCTGAAGCAGCTTCTTCCTATGATCATCATCATCAACAAGGACTTGTTCCAACTTCTTCCACTAATAACAAGGACATGTTCCTTGACACTTGTTCTGCTGATTTCATGGGGAATTACAACAACATGAGTAGCTATGCATCATCATCTTCCACTGTCACTGTCGTCACCGACAACAACTCCAACTCTTGTTGCAATTGGTTCACACCACAAACATCAAGGCCTTTTGATATCAACTCAGTAGATTTCACCTCATCATCATCCTTCCTACCTCCTGCTAGTTCCTTTTGCTATAATAAGCAGCAGCCAGAAGATATGAATGTGAAGAACAACACTACCACCACCATGGTTTCTTCTTCTTCATGGGGATTGGAAAGAGAGGAGGCTCATCAAATTCATCTGATGGAAGCAGCAGAAGAGGCAAAGTGGTCTGAGTATCTTCAAAATCCAATGTTGATGCTTGCAGCTGTTCATCAGAACAACCAAGAGATAATAAAGCCTCTTCCTCCAACCACAACACATTTGGTTCCTGATACATTAGGGGCTATCATGTTGCCTCATTCCAAACAAACTTCTTCTACCACCACCACCTTTTCCAAGGACATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1149 0.4273 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPFSEIQNNNNNNNGLEEKSQGQGQEKALSNDNELNLLRSESSNKSEAASSYDHHHQQGLVPTSSTNNKDMFLDTCSADFMGNYNNMSSYASSSSTVTVVTDNNSNSCCNWFTPQTSRPFDINSVDFTSSSSFLPPASSFCYNKQQPEDMNVKNNTTTTMVSSSSWGLEREEAHQIHLMEAAEEAKWSEYLQNPMLMLAAVHQNNQEIIKPLPPTTTHLVPDTLGAIMLPHSKQTSSTTTTFSKDIQNLTAAFGHI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151052g00010 382 MobiDBLite consensus disorder prediction 167 194 - -
Stsc151052g00010 382 FunFam Myb transcription factor 11 67 - -
Stsc151052g00010 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc151052g00010 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc151052g00010 382 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc151052g00010 382 SMART sant 13 63 IPR001005 -
Stsc151052g00010 382 SMART sant 66 114 IPR001005 -
Stsc151052g00010 382 CDD SANT 17 61 IPR001005 -
Stsc151052g00010 382 MobiDBLite consensus disorder prediction 123 155 - -
Stsc151052g00010 382 Gene3D - 11 67 - -
Stsc151052g00010 382 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc151052g00010 382 Gene3D - 68 154 - -
Stsc151052g00010 382 PANTHER MYB DOMAIN PROTEIN 55 1 278 - -
Stsc151052g00010 382 MobiDBLite consensus disorder prediction 128 155 - -
Stsc151052g00010 382 CDD SANT 69 109 IPR001005 -
Stsc151052g00010 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc151052g00010 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc151052g00010 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc151052g00010 382 FunFam MYB transcription factor 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151052g00010 Stsc-Chr151052 47678 49226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151052g00010 1 147 MYB Transcription Factor Family AT4G01680 87.755 3.08e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151052g00010 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151052g00010 K09422 - gmx:100037467 378.252