Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc151051g00035 | ATGGGAAAGTCTTTCAAGGATTCGCTCAAAGCACTTGAAGCTGACATACACTATGCAAATACTCTAACTTCTGATTATCCGAGAGAATACAATGGCGCCACCTTACAAATGAGATTGTCTTATAGCCCGGCTGCCCAGTTTTTCCTTTTCTTAGTCCAGTGGACTGATTGTCACCTCGCCGGAGCCTTAGGATTGCTAAGAGTTCTCATATACAAGACATATGAGGATGGGAAGACAACCATGTCGGTTTATGAACGAAAAGCCAGTTTGAAGGAGTTTTATGGTGTGATCTTTCCTTCTTTATTACAACTTCAGAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGATCTATGTGCTATGAAGTACAGGCTGAGAGATACGGCAGGAAAAGGGAAATTATCTGAGATTGATATCGAAAGAGAAGAAGAATGTGGTATTTGCTTGGAGGTGAACAGCAAGGTTGTGTTGCCGAATTGCTACCATTCGATGTGTATGAAATGCTACCGAGACTGGCGCGCGCGATCGCAGTCTTGCCCTTTCTGCCGGGAAAGCCTTAAGAGAGTGAACTCCGGCGACCTTTGGATATATATGAGCAACAAGGAAATGGATGACTTGGCTTCAATCAACAAGGAGAACTTAAAGAGGCTGTTTATGTACATTGATAAGTTACCTCTAATTGTGCCAGATCCTATGTTCTTGACTTATCCTCCACATCGTTTCTAA | 729 | 0.4252 | MGKSFKDSLKALEADIHYANTLTSDYPREYNGATLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRVLIYKTYEDGKTTMSVYERKASLKEFYGVIFPSLLQLQRGITDVEDRKQKDLCAMKYRLRDTAGKGKLSEIDIEREEECGICLEVNSKVVLPNCYHSMCMKCYRDWRARSQSCPFCRESLKRVNSGDLWIYMSNKEMDDLASINKENLKRLFMYIDKLPLIVPDPMFLTYPPHRF | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc151051g00035 | 242 | ProSitePatterns | Zinc finger RING-type signature. | 161 | 170 | IPR017907 | - | |
Stsc151051g00035 | 242 | FunFam | RING/U-box superfamily protein | 127 | 193 | - | - | |
Stsc151051g00035 | 242 | ProSiteProfiles | Zinc finger RING-type profile. | 146 | 184 | IPR001841 | - | |
Stsc151051g00035 | 242 | SMART | ring_2 | 146 | 183 | IPR001841 | - | |
Stsc151051g00035 | 242 | SUPERFAMILY | RING/U-box | 135 | 189 | - | - | |
Stsc151051g00035 | 242 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 193 | IPR013083 | - | |
Stsc151051g00035 | 242 | Pfam | Zinc finger, C3HC4 type (RING finger) | 143 | 189 | - | - | |
Stsc151051g00035 | 242 | PANTHER | RING FINGER PROTEIN 41, 151 | 3 | 235 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc151051g00035 | Stsc-Chr151051 | 204083 | 206665 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc151051g00035 | 90 | 188 | C3H Transcription Factor Family | AT5G01960 | 29.808 | 6.82e-07 | 47.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc151051g00035 | K25840 | - | pop:7466068 | 418.698 |