Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151050g00038 ATGCAATTACCAAGTAGTAGTGGCAGCGGCAGTGGTGGTAGCGGTAGCGGTAGGGGCGGTGGTATTGCCAGATTCCGTTCAACTCCTGCGAGCTGGTTAGAATCATTATTTGTCAAGGAGGAAGTGGAAGAAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGATCCGCTGGCCTTGAATAGCAGCAGTAGCATCCACCAGGTGGGATTCACTCAGCTTCTTTCCGGTGAGACAAGCGGGGTTTTCCGCCACAATAGTTCTCCCGCCGATTTTGTATTCGACTACTCTCAACAATACGTATCCTCCAACTACGACTACGACTATGCCTACGCTTCTCCGGATAACAGCAGCGCCAGTAATCCAATCCCGCAGGAAATTAAGCAGAGAGAGATGAAAGTGGAGAATAAGATTACAAAGGACTCTGTGCCTTGGAAAGTTCGGGCAAAGCGTGGCTGTGCTACACATCCAAGGAGTATTGCTGAAAGAGTTCGGAGGACGCGTATCAGTGATCGGATCAGGAAGCTGCAGGAACTTGTACCAAACATGGATAAGCAAACGAATACTGCAGACATGTTAGATGAGGCAGTAGCTTATGTCAAGTCTTTACAAAAGCAAATTGAGGAACTATCTGAGCAGCAACGGAGGTGTAATTGCATGGTTCAAGAGAGTAAATATAAGTAG 681 0.4787 MQLPSSSGSGSGGSGSGRGGGIARFRSTPASWLESLFVKEEVEEGGGGGGGEEEDPLALNSSSSIHQVGFTQLLSGETSGVFRHNSSPADFVFDYSQQYVSSNYDYDYAYASPDNSSASNPIPQEIKQREMKVENKITKDSVPWKVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELSEQQRRCNCMVQESKYK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151050g00038 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Stsc151050g00038 226 SMART finulus 158 208 IPR011598 GO:0046983
Stsc151050g00038 226 Coils Coil 192 222 - -
Stsc151050g00038 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 221 IPR036638 GO:0046983
Stsc151050g00038 226 Gene3D - 153 225 IPR036638 GO:0046983
Stsc151050g00038 226 MobiDBLite consensus disorder prediction 39 62 - -
Stsc151050g00038 226 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 223 - -
Stsc151050g00038 226 FunFam Transcription factor bHLH130 family 153 222 - -
Stsc151050g00038 226 MobiDBLite consensus disorder prediction 1 24 - -
Stsc151050g00038 226 Pfam Helix-loop-helix DNA-binding domain 157 203 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151050g00038 Stsc-Chr151050 216103 219314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151050g00038 80 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 51.445 1.24e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151050g00038 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151050g00038 - - adu:107477635 328.561