Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151050g00006 ATGTCTGAATATTCTTCTCGGCTTACCCCAATCATTTTGCCTTTGATGGCTTCGATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAAGCACTTGCTGAGCTAATATATCATTGTGTTGCTCGTAGGCCATGCCCGAATGATAAATTAATTAAAAATATATGCAGTATGACGTGCTTGGATCCTTCTGAGACCCCTCAAGCTAAACTCATTTGCTCCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTGGAACTCCCGTGAGCAAACATAAATCGAAGGTCCATGTTTTGGCTGGTGAAGATAGATCGAAAGTGGAAGGGTTTATAAGCAGACGTGGGTCGGAAGTAGCTTTGAGGCATTTGTGTGAGAAGTTTGGTGCGTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAACCAAGCCCCTCTGAATCTCCAGCAGTCACTGACGAAAAACAAGTTACTATGGTTGTTGAGTCTGTTAGTGATCCCCAGAGATTGATTAACAATATTCAGGTAGTACGATCTATTTCACCCTTGTTAAATGAGGAGTTGAAGCCAAAATTGTTGACACTTCTCCCGTGCATTTTTAAATGCATTCAGCATCCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCCCGGTCAATGACTGTGAAAGTTATGAGTGCCATAGTTGAAAATGCTATCCCAATGTTGGAAGATGCATCATCAGTTCATGCTCGGCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGTGAAGAGTTGGTCCCTTACGCTCCATTGTTGGTAGTTCCACTTCTAAGGTGCATGAGTGACTGTGATCAGTCTGTAAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTGCCTCTACTTCCTTTGGCACGGGGCCTTCCTCAACCAGTTGGATTAGGGGAAGGTATATCTAGAAATGCTGATGATTTGCAATTTTTGGAGCAACTGCTTGACAATTCCCACATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTGACATTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACGCTTCAGGCATCGGCTATTGTGGCCTCTGATATCGCCGAGCACCAAACTCAATCTGGGAATGGAGATCTTCTACCATCTTTAATTATTTGCCCGTCAACCCTAGTTGGACACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTTATATCTAGTCTTCAGTATGTTGGTTCTGCTCAGGACCGAATGATTCTTCGAGATCATTTTTGCAAGCATAATGTCATTATAACATCATATGATGTTGTCCGTAAAGACGTCGATTATTTGGGACAGCTTCTGTGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCTAAGTCCAAAGTTACCCTTGCTGTAAAGCAGTTAAAAGCTCAACACCGCTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACAGAGAGACAGTTCCAAGCAACATATGGAAAACCACTTTTAGCTGCTAGAGATCCAAAATGCTCAGCTAAAGATGCTGAAGCAGGAGCACTTGCTATGGAGAGATTGCATAAGCAGGCTATGCCTTTTCTCCTTCGTCGAACAAAGGATGAGGTCTTGTCTGATCTGCCGGAAAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAATTTAAACTCTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCGTCTATTGTGACAACGAATGAGTCTGCTGGAGCAGAAGGAAGCAGCAGTTCAACTAAAGCATCTTCACATGTTTTCCAGGCACTTCAATATTTGCTGAAGTTGTGTAGTCATCCATTGCTTGTCATCAATGATAAGGTTTTAGATTCAATTTCGACCATTCTCTCAGGAATGTTACCGGGTGTTTCTGACATCATTTCTNNNNNNNNNNTTCACAACCTCCATCATTCGCCAAAATTAGTTGCTCTTCAGGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATGCTTCTGGTTCTGAGGGTTCTGTTAACGTTGGTCAGCACAGGGTCTTAATATTTGCTCAACACAAGGCTTTTCTGGATATAATAGAAAAAGATTTGTTTCAGACTCACATGAAAAATGTTACATACTTGCGGCTAGATGGATCAGTTGAGCCAGAAAAGCGTTTTGACATTGTCAAAGCATTCAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTTGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCCATGAGAGATCATCAGGCTATGGATAGAGCGCACAGGTTAGGTCAGAAAAAAGTTGTTCATGTCCACCGTCTAATAATGCGTGGTACTTTGGAAGAGAAGGTTATGAGTCTGCAAAGGTTTAAAGTGTCTGTGGCTAATGCTGTGATTAATGCGGAGAATGCTAGCATGAAGACGATGAATACAGACCAGTTGCTTGATTTGTTTGCTTCAGCAGATACCTCCAGGAAGGGATCTTCTGCCGGGAAGAGTTTGGAAAACAACCCCGAAGGAGACGCCAAATTAGTAGGCACTGGAAAGGGGCTGAAAGCCATACTCGGGGGATTGGAAGAGCTTTGGGACCAATCACAATACACAGAAGAGTATAATCTAAGTCAATTCTTAGCAAAACTAAATGGTTAA 2880 0.4184 MSEYSSRLTPIILPLMASIRREQEEILQMKSAEALAELIYHCVARRPCPNDKLIKNICSMTCLDPSETPQAKLICSMESIDDQGLLSFGTPVSKHKSKVHVLAGEDRSKVEGFISRRGSEVALRHLCEKFGALLFDKLPKLWDCLTEVLKPSPSESPAVTDEKQVTMVVESVSDPQRLINNIQVVRSISPLLNEELKPKLLTLLPCIFKCIQHPHVAVRLAASRCITSMARSMTVKVMSAIVENAIPMLEDASSVHARQGAGMLINFLVQGLGEELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPVGLGEGISRNADDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHQTQSGNGDLLPSLIICPSTLVGHWAFEIEKYIDVSVISSLQYVGSAQDRMILRDHFCKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMERLHKQAMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFKLYEQFSGSRVKQEMSSIVTTNESAGAEGSSSSTKASSHVFQALQYLLKLCSHPLLVINDKVLDSISTILSGMLPGVSDIISXXXXHNLHHSPKLVALQEILEECGIGVDASGSEGSVNVGQHRVLIFAQHKAFLDIIEKDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVHVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASADTSRKGSSAGKSLENNPEGDAKLVGTGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151050g00006 959 Gene3D - 2 317 IPR011989 -
Stsc151050g00006 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 897 IPR027417 -
Stsc151050g00006 959 SMART ultradead3 357 554 IPR014001 -
Stsc151050g00006 959 FunFam TATA-binding protein-associated factor BTAF1 108 319 - -
Stsc151050g00006 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 593 IPR027417 -
Stsc151050g00006 959 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 373 543 IPR014001 -
Stsc151050g00006 959 Pfam Domain of unknown function (DUF3535) 5 144 IPR022707 -
Stsc151050g00006 959 CDD DEXHc_Mot1 361 593 IPR044078 GO:0005524
Stsc151050g00006 959 Pfam SNF2-related domain 379 675 IPR000330 GO:0005524|GO:0140658
Stsc151050g00006 959 SUPERFAMILY ARM repeat 10 400 IPR016024 -
Stsc151050g00006 959 Gene3D - 334 592 IPR038718 -
Stsc151050g00006 959 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 731 887 IPR001650 -
Stsc151050g00006 959 Pfam HEAT repeat 203 231 IPR000357 GO:0005515
Stsc151050g00006 959 SMART helicmild6 755 841 IPR001650 -
Stsc151050g00006 959 CDD SF2_C_SNF 710 852 - -
Stsc151050g00006 959 Gene3D - 603 917 IPR027417 -
Stsc151050g00006 959 Pfam Helicase conserved C-terminal domain 739 841 IPR001650 -
Stsc151050g00006 959 FunFam B-TFIID TATA-box-binding protein-associated factor 1 331 592 - -
Stsc151050g00006 959 FunFam TATA-binding protein-associated factor 172 603 922 - -
Stsc151050g00006 959 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 958 IPR044972 GO:0003677|GO:0016887|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151050g00006 Stsc-Chr151050 42363 48446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151050g00006 356 896 RAD5 or RAD16-like Gene Family AT1G02670 26.904 1.19e-43 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc151050g00006 SNF2_N 5.1e-62 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151050g00006 K15192 - gmx:100777977 1675.6