Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151050g00004 ATGGCTTCTTTTCTCATTAACTCCTCCTTCTTCACCCTCTTCATTTTCTTCTGCTTCCTCTCTTCTCTTACCATCATAACTACACTTTCAACTGTTTCCATCTCTGAGACTTCCAACCAAACATTCATTTGTGCCTTACAAGTACAAGGACAAGGACAAGGACAATCTAACCTTAACTGTACCAGCTTTCCACCTAGAATCCCTCTTCAACTGAATCCCAACCTCTCATATTCTGAGATTGTTGGTGGCAGTGGATTCCTATGTGCATTGAGGCCACCATCTTCTTCTAACTCCATCATGGTCTGTTGGAGATTCTCTGCCAATGCATCCAATGTTCCTTTCAAGCGTATATACCATGGACCTGTCATTCAAAGCATGGATGCTGGAAACTCTCATGTTTGTGCCCTTGTAACTGACAACAATAACAGCCTTAGGTGCTGGCAATGGCCTCACTTTGATTCAAGCAAGCTCACCAACTTGTCAAGTATTGCTGTTGGACAGGATTTCGTCTGCGGCTTATCGGAGTCATCCGGTGAGGTTACTTGCATTGGTGGTGATACCGGAGTGGTTGGCCGGGAGCCCGGTGGCGCGCACTCTGCCATTGCAGCCGGGTTTAGGCATGCTTGTGCCATTTCTCTTGATGGCAGCATGGATTGCTGGGGTGACACTGGTTCAATGGATCAGAAACCGCAGGGTAAGTTTCTTGATTTGGCCTTGGGAGAGAACAGAACTTGTGCACTAAGAATTAATAAAACAGTTGCTTGTTGGGGATCAAATAATTTCAGGACTCCACAGAGATTTGAAAGGACTTCCTTTGAGGCAATTGTGGCAAAGAGAAGTGTTTTCTGTGGAATTGTGAGTTATAATTTTAGTTTGGTATGTTGGGGTGCTTCGGTTTTTGAGACAAATTCTGAGGTGTTTGAGAATGTCCTCCCAGGACCTTGTAGGAGTAACTGCCCATGTGGAATCTTAACAGATTCTGCCACACTATGCTCTTCAGGAATGTCAATTTGCACACCCTGTTCGCCAAGAAATGATCCTGATTCGCCGTCACCATTGCCGCCACCCACGAATCCTCCAACCGGAGCTACAAATAGTAGTCGTTGGAGCAAGAAGATGGTGGCATTCTTGGTGGTTGGATGTGTTGGTTGCAGTTCCTTGCTGCTAGTTTTTTGTTTCTTCATTTACTGGCATTGCAAAGGTAAAGGAGGCCGCGTCCACGACTCTGGCAGACTGGACGAATCAGGGTCGGAGAGTGCCTCGCCGAGTCCCCCGGAAGGCGGAGCCAGCCGTGGAGTCCTAGAGAAGCGTTTGAGCCATGTGATAAGCATGGGAAATGGGAGCCATTTAGAGGAATACACTCTTCAAGTGCTTCTTGAAGCCACCAACAATTTCTCAGAGGACAAGAAAATAGGGACAGGTAGCTTTGGGTCAGTATACCATGCCACACTCCAAGATGGCAAGGAAGTCGCCATAAAAAGAGCCGAAAACTCGCCCCATTCGCCGTCGAACGCCCTCTTGGGTGCCACCAGAAGGCAGGAAGATAAAGACAGTGCATTTGTGAACGAGCTAGAGAATCTCTCAAGGCTCCACCACAAGAATCTAGTGAGGCTATTGGGGTTCTATGAGGACTCAAACGAACGCATATTGGTATATGAGTACATGAACAATGGCAGCTTAAATGAGCATCTCCACAAGCTTCAGAGTTCAGCACTCATGTCTTGGGCTGTGAGGATCAAGGTAGCACTTGATGCAGCAAGAGGCATAGAGTACCTTCACCAATACGCAATCCCACCAATCATTCACCGTGACATAAAGTCATCAAATATCTTGTTAGATTCCAAGTGGACAGCCAAAGTCTCTGATTTTGGACTCTCACTGATGGGTCCTGAAGACGAAGAGTCGCACCTTTCGCTCCTCGCGGCCGGGACGGTTGGTTACATGGACCCTGAATACTACAGGCTTCAAATGCTAACCACAAAAAGTGATGTGTATAGCTTCGGAGTTGTGCTGCTAGAACTTCTGTCAGGCCACAAGGCCATACATAAGAATGAGAATGGTGTCCCAAGAAATGTGGTGGATTTTGTGGTGCCATACATTAATCAAGATGAGATTCACAGGGTGTTGGACCGGAGAATGCCGCAGCCGACGCCGTTCGAGATAGAGGCGGTGGCCTATGTTGGTTACTTGGCAGCAGATTGTGTGAGGCTGGAGGGCAGAGACAGACCAACCATGACTGAAGTTGCAAATTACTTGGAAAGAGCATTGGCTGTGTGTTTGGCAAAACCATCCATGTCAAGATCCACCACTAACACTTCTTCTGAATGA 2328 0.4721 MASFLINSSFFTLFIFFCFLSSLTIITTLSTVSISETSNQTFICALQVQGQGQGQSNLNCTSFPPRIPLQLNPNLSYSEIVGGSGFLCALRPPSSSNSIMVCWRFSANASNVPFKRIYHGPVIQSMDAGNSHVCALVTDNNNSLRCWQWPHFDSSKLTNLSSIAVGQDFVCGLSESSGEVTCIGGDTGVVGREPGGAHSAIAAGFRHACAISLDGSMDCWGDTGSMDQKPQGKFLDLALGENRTCALRINKTVACWGSNNFRTPQRFERTSFEAIVAKRSVFCGIVSYNFSLVCWGASVFETNSEVFENVLPGPCRSNCPCGILTDSATLCSSGMSICTPCSPRNDPDSPSPLPPPTNPPTGATNSSRWSKKMVAFLVVGCVGCSSLLLVFCFFIYWHCKGKGGRVHDSGRLDESGSESASPSPPEGGASRGVLEKRLSHVISMGNGSHLEEYTLQVLLEATNNFSEDKKIGTGSFGSVYHATLQDGKEVAIKRAENSPHSPSNALLGATRRQEDKDSAFVNELENLSRLHHKNLVRLLGFYEDSNERILVYEYMNNGSLNEHLHKLQSSALMSWAVRIKVALDAARGIEYLHQYAIPPIIHRDIKSSNILLDSKWTAKVSDFGLSLMGPEDEESHLSLLAAGTVGYMDPEYYRLQMLTTKSDVYSFGVVLLELLSGHKAIHKNENGVPRNVVDFVVPYINQDEIHRVLDRRMPQPTPFEIEAVAYVGYLAADCVRLEGRDRPTMTEVANYLERALAVCLAKPSMSRSTTNTSSE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151050g00004 775 SUPERFAMILY RCC1/BLIP-II 114 298 IPR009091 -
Stsc151050g00004 775 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 198 764 IPR044815 GO:0004674
Stsc151050g00004 775 SMART serkin_6 465 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151050g00004 775 ProSiteProfiles Protein kinase domain profile. 465 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151050g00004 775 Pfam Protein kinase domain 465 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151050g00004 775 SUPERFAMILY Protein kinase-like (PK-like) 442 753 IPR011009 -
Stsc151050g00004 775 Pfam Regulator of chromosome condensation (RCC1) repeat 200 222 - -
Stsc151050g00004 775 Gene3D Phosphorylase Kinase; domain 1 431 554 - -
Stsc151050g00004 775 Gene3D Transferase(Phosphotransferase) domain 1 555 765 - -
Stsc151050g00004 775 ProSitePatterns Protein kinases ATP-binding region signature. 471 493 IPR017441 GO:0005524
Stsc151050g00004 775 CDD STKc_IRAK 471 754 - -
Stsc151050g00004 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Stsc151050g00004 775 Gene3D - 67 337 IPR009091 -
Stsc151050g00004 775 FunFam Serine/threonine-protein kinase-like protein CCR4 555 772 - -
Stsc151050g00004 775 MobiDBLite consensus disorder prediction 407 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151050g00004 Stsc-Chr151050 33464 35791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151050g00004 28 770 Receptor kinase-like Gene Family AT5G47850 51.895 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc151050g00004 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151050g00004 - - pvu:PHAVU_011G003100g 968.763