Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151049g00031 ATGGAAGATGACAAAGCCTCCATCACAAGTCTAACTTTGGGTCTGGGAATTGGAGGAGGGTATCTCCCAAGGAAGAAGAAGCAAAAAGTGACCATGATGATGAACAAGCCTAATAAGCCTGCGCTTTCGCTGGACCTAACTTTTGAGGATGATGATGAGGCTTATCCAAAAGAAGCCATTGATGATGATGAAGGTGGTGATGATCAAGAAGAAGAGCTATCCATGACTTTGAATAAGAGAATCTGTGAAGAACATAATTATAGTAACAAGTGTTCGAATGAAAAGAACAGAGATAGCAGCTATAATGATAACAATTGCATCAGAAAGAAACTGAGACTCACAAAGGAGCAATCAGCTTTGCTCGAAGAAAATTTCAAGCTTCATACCACTCTTAACCAAGCTCAGAAACAAGCACTTGCTAAGCAATTGAATTTAAAGCACAGACAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAGAGATTAACAGATGAGAATTTGAGGTTGAAGAAGGAATTGCAGGAGCTTCGTGCAATCAAAGTTGGATCATCACCAACACCGCCATTGTACATTCAACTCTCCAAATCTGCATCCTTGACTATTTGTTCTTCTTGTGAGGAGTTATTCAGGAAGCCCAAACAAGAAAATATGTAG 708 0.3997 MEDDKASITSLTLGLGIGGGYLPRKKKQKVTMMMNKPNKPALSLDLTFEDDDEAYPKEAIDDDEGGDDQEEELSMTLNKRICEEHNYSNKCSNEKNRDSSYNDNNCIRKKLRLTKEQSALLEENFKLHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELRAIKVGSSPTPPLYIQLSKSASLTICSSCEELFRKPKQENM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151049g00031 235 Pfam Homeobox associated leucine zipper 164 196 IPR003106 GO:0006355|GO:0043565
Stsc151049g00031 235 SMART halz 164 211 IPR003106 GO:0006355|GO:0043565
Stsc151049g00031 235 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Stsc151049g00031 235 Gene3D - 100 169 - -
Stsc151049g00031 235 MobiDBLite consensus disorder prediction 53 72 - -
Stsc151049g00031 235 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Stsc151049g00031 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 226 - -
Stsc151049g00031 235 MobiDBLite consensus disorder prediction 53 71 - -
Stsc151049g00031 235 SMART HOX_1 106 168 IPR001356 GO:0003677
Stsc151049g00031 235 SUPERFAMILY Homeodomain-like 96 165 IPR009057 -
Stsc151049g00031 235 Coils Coil 163 197 - -
Stsc151049g00031 235 CDD homeodomain 108 165 IPR001356 GO:0003677
Stsc151049g00031 235 Pfam Homeodomain 108 162 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151049g00031 Stsc-Chr151049 269390 270949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151049g00031 108 226 Homeobox Transcription Factor Family AT4G37790 73.109 4.51e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151049g00031 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151049g00031 K09338 - gmx:100778922 227.254