Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151049g00027 ATGCCCCGTGGAGTACTAGAAGGGGCGGGACGTCCTATTGGGGAAAGGGGCAGTGGCCCCCCAACTAGGGATGTCAATGGGGTAGGTCGGGACGAATGGGGCGAGGCGGGACAGGTAACGGGGCGGGGCGCTCAGTACCCATACCCACACAACCGTCCCAAATACCCGCCCCATTCAGAGCGGGGCAGGTCGGGACGGGACGGGTCAGTGGATCCACCACCTCCACCACCATCTAATGACAAGCCATCCCATAAAAAATCTGAGACAACTTTGGTCTTCCTTGGAGGGATAGTGCTCTTCATCATATTGTTGATCATTTTGCTTGTTTTCTGGAAGCGTATGAGAGGAACCAAAAATACTAAACCTCCTAAAACTACTAAAGCCAAACAAGGGAAACTTACTGAAAAAGCACAAGTTATGGAGATGATATTTTCATCTAAACAACAGCAAGGATCCATGGAGTTGTTGAGTGGGAACCTTGGGACAATTAGTTACTTTGACTACCAGACATTAAGAAGAGCAACCAAGAACTTTTCTCCTACTAATCTTCTTGGAAGTGGTGGATTTGGTCCTGTCTATCGGGGAAAGTTGATGGATGGAAGAGTAATTGCTCTTAAGAAACTATCTTTGAACAAATCACAGCAGGGAGAAAGAGAATTTCTGTCAGAGGTGAGATTGATCACAAGTATCCAACACAGAAATCTGGTTCGCCTTCTTGGATGCTGCATAGATGGACCCCAAAGGATACTTGTCTATGAATACATGAAGAACAGAAGTTTGGACCTCTTCATATATGGGAACAATGGTGATCAATTCCTGAATTGGAGCACTAGGTTCCAAATTATTCTAGGCGTGGCAAGGGGATTGCAGTACCTTCATGAGGATTCGCATCTAAGAATTGTTCATCGAGATATCAAAGCGAGCAATATTCTTCTTGATGACAAGTTTCATCCCAAGATTGGAGACTTTGGTCTTGCTAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACACAATTTGCTGGAACATTGGGTTATACAGCTCCGGAATATGCTATTCGAGGAGAACTATCAGAGAAGGCGGACATCTATAGTTTCGGAGTTCTTTTGCTTGAAATCATTTGCTGCAGAAAAAACACAGATCTCACTTTGCCATCCGGAATGCAGTACCTCCCTGAATATGCATGGAAACTTTACGAGAATTCAAAGACTATGGAGCTTGTGGATCCAAAGCTGAAAGAAGATGGGTTGGTGGAGAAAGATGTTATGCAAGCATTCCACGTGGCATTCCTATGCCTTCAGCCTGTTGCAAATCTAAGACCTCCAATGTCAGAGATGGTGGCACTGTTGACATTCAAAATTGACATGGTCACAACACCAATGAGGCCAGCATTTCTTGATCGAAGGCGCAAAACTGATCTTCAAACTAAAACTACCCCTTCTCCAGATGTAATATCTCATGCTTTCACATCTCCCATGAGTAATAGTTTTATCTAG 1497 0.4462 MPRGVLEGAGRPIGERGSGPPTRDVNGVGRDEWGEAGQVTGRGAQYPYPHNRPKYPPHSERGRSGRDGSVDPPPPPPSNDKPSHKKSETTLVFLGGIVLFIILLIILLVFWKRMRGTKNTKPPKTTKAKQGKLTEKAQVMEMIFSSKQQQGSMELLSGNLGTISYFDYQTLRRATKNFSPTNLLGSGGFGPVYRGKLMDGRVIALKKLSLNKSQQGEREFLSEVRLITSIQHRNLVRLLGCCIDGPQRILVYEYMKNRSLDLFIYGNNGDQFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDDKFHPKIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDLTLPSGMQYLPEYAWKLYENSKTMELVDPKLKEDGLVEKDVMQAFHVAFLCLQPVANLRPPMSEMVALLTFKIDMVTTPMRPAFLDRRRKTDLQTKTTPSPDVISHAFTSPMSNSFI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151049g00027 498 Pfam Protein tyrosine and serine/threonine kinase 182 448 IPR001245 GO:0004672|GO:0006468
Stsc151049g00027 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Stsc151049g00027 498 SMART serkin_6 178 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151049g00027 498 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 255 460 - -
Stsc151049g00027 498 FunFam Cysteine-rich receptor-like protein kinase 10 142 254 - -
Stsc151049g00027 498 ProSiteProfiles Protein kinase domain profile. 178 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151049g00027 498 SUPERFAMILY Protein kinase-like (PK-like) 157 453 IPR011009 -
Stsc151049g00027 498 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 72 478 - -
Stsc151049g00027 498 MobiDBLite consensus disorder prediction 1 85 - -
Stsc151049g00027 498 Gene3D Phosphorylase Kinase; domain 1 136 254 - -
Stsc151049g00027 498 Gene3D Transferase(Phosphotransferase) domain 1 255 458 - -
Stsc151049g00027 498 CDD STKc_IRAK 184 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151049g00027 Stsc-Chr151049 212531 218457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151049g00027 166 466 Receptor kinase-like Gene Family AT1G56120 49.169 1.30e-98 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151049g00027 PK_Tyr_Ser-Thr 4.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151049g00027 - - aip:107633022 666.381