Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151049g00010 ATGTCTTCAAAGATGAGGGTCATGGGTGGTTCTGATGAAACTAATAACAATAATAATTTCAGGTTATTAGGGTTTGATGACGAAGAGCCTCAGCCACCAAAGCAGCCACCGCCAATATCCCCTTTAGGAACCGATAACAGCAGCAACAACAACAATAACAATTCTTCTTCAAACCATTATAATAATAATATGAGTGTTAGGGTTTGTTCCGATTGCCACACCACCAAGACTCCTCTTTGGAGAAGTGGACCAAGAGGTCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGCGAGCTGCCATGGCGGCCGCAGCGGAGGTGGCGGCATCAGGGAACGATACAACTCTCATGGCTAATACTGATGATGGATCTGATCATCATGTTAAAAAGAAGCGCAATAATAATAACAACAATAATAAACAGTCTCATCACAACAGAGGAAGAAAGAAGGATGGTAATAATTTTGATGAGTTGGCAATAAGTTTGAGCAAGAACTTGGCATTGAAAGAAGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCTTTATCATATGGTTTGCTTCATGGATTTCCTTCACATCGTTACTTAGACTAA 621 0.4171 MSSKMRVMGGSDETNNNNNFRLLGFDDEEPQPPKQPPPISPLGTDNSSNNNNNNSSSNHYNNNMSVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAEVAASGNDTTLMANTDDGSDHHVKKKRNNNNNNNKQSHHNRGRKKDGNNFDELAISLSKNLALKEVFPHDEKEAAILLMALSYGLLHGFPSHRYLD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151049g00010 206 MobiDBLite consensus disorder prediction 138 152 - -
Stsc151049g00010 206 FunFam GATA transcription factor 21 63 157 - -
Stsc151049g00010 206 MobiDBLite consensus disorder prediction 41 62 - -
Stsc151049g00010 206 SMART GATA_3 63 115 IPR000679 GO:0006355|GO:0043565
Stsc151049g00010 206 MobiDBLite consensus disorder prediction 119 158 - -
Stsc151049g00010 206 MobiDBLite consensus disorder prediction 1 22 - -
Stsc151049g00010 206 Pfam GATA zinc finger 69 102 IPR000679 GO:0006355|GO:0043565
Stsc151049g00010 206 Gene3D - 64 108 IPR013088 GO:0006355|GO:0008270
Stsc151049g00010 206 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 198 - -
Stsc151049g00010 206 ProSitePatterns GATA-type zinc finger domain. 69 94 IPR000679 GO:0006355|GO:0043565
Stsc151049g00010 206 CDD ZnF_GATA 68 96 IPR000679 GO:0006355|GO:0043565
Stsc151049g00010 206 ProSiteProfiles GATA-type zinc finger domain profile. 63 99 IPR000679 GO:0006355|GO:0043565
Stsc151049g00010 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 102 - -
Stsc151049g00010 206 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151049g00010 Stsc-Chr151049 83817 85174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151049g00010 46 198 C2C2-Gata Transcription Factor Family AT4G26150 46.286 1.53e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151049g00010 GATA 1.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151049g00010 - - adu:107478822 213.386