Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151048g00023 ATGAAGAGGAGGAAGAAAAGGCCACCTCACCGACCTAAAGATGCTTCTTCATATTGGCAAAACAATGATGCTCCACCTCCACATCGTGTCATCGACATCAACCCAAACCCATCAACTAGCAGTGGTGCTTCCGGTTCAGATTTATACAATGCGCCCGATGAAAACCCTCTTCAAGTAGCTACTTCTGCAGGTATTGTATTGGGCTTCTCCCCGAGCAAATTTACATATGAGGAGTTGGCACGCGCAACTGATGCCTTCTCTGATTCCAACCTCCTTGGACAAGGCGGATTTGGTTATGTCCATAAAGGGTTTCTTCCAAACGGCAAGGAGGTCGCCATCAAACAGCTCAAGGCCGGTAGTGGCCAGGGGGAGCGTGAATTCCAAGCTGAAGTTGAGATCATTAGCAGGGTTCATCACAGGCATCTTGTTACTTTGGTAGGCTATTGCATCACCGGTACCAAGAGGCTTCTTGTTTATGAGTTTGTTCCAAACAATACTTTGGAGTTCCATTTACATGGAAAAGAGCTACCTACGATGGATTGGTCAACAAGATTGAAAATTGCTTTAGGAGCTGCAAAAGGACTTGCATATCTTCACGAAGATTGTCATCCCAAGATCATCCATCGTGATATCAAAGCTGCCAACATCCTTCTCGATTCTAACTTTGAACCCAAGGTTGCAGATTTTGGGCTTGCAAAGTTTTCTTCTGATCTGAATACACATGTTTCCACTCGAGTAATGGGAACTTTTGGTTATTTGGCTCCAGAATATGCTGCAAGTGGAAAGCTAACCGAAAAATCAGATGTTTTCTCGTATGGAGTTATGCTTTTGGAGTTGATCACCGGTCGTCGTCCTGTTGATTCAAGTCATAGTTTGGTAGACTGGGCAAGACCTTTGCTCACAAGAGCTTTGGAAGATCAAAATTTTGATCCCCTGATTGATCCAAGGCTCCAGGATGAATATGAACCCAGTGAGATGACTCTCATGGTGGCATGTGCTGCAGCTTCTATTCGACATTCAGCAAAGCACCGCCCAAGGATGAGCCAGATTGCTCGTGCTCTGGAAGGAGATGCGTCTCTTGAAGATCTCAATGATGGAGTTAAACCAGGACACAGCAGAAGCTATAGTTCTCGTGAAAGGACAGATTATGAGACAGCACAATACTAG 1167 0.4507 MKRRKKRPPHRPKDASSYWQNNDAPPPHRVIDINPNPSTSSGASGSDLYNAPDENPLQVATSAGIVLGFSPSKFTYEELARATDAFSDSNLLGQGGFGYVHKGFLPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHRHLVTLVGYCITGTKRLLVYEFVPNNTLEFHLHGKELPTMDWSTRLKIALGAAKGLAYLHEDCHPKIIHRDIKAANILLDSNFEPKVADFGLAKFSSDLNTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVMLLELITGRRPVDSSHSLVDWARPLLTRALEDQNFDPLIDPRLQDEYEPSEMTLMVACAAASIRHSAKHRPRMSQIARALEGDASLEDLNDGVKPGHSRSYSSRERTDYETAQY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151048g00023 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Stsc151048g00023 388 Gene3D Transferase(Phosphotransferase) domain 1 162 367 - -
Stsc151048g00023 388 MobiDBLite consensus disorder prediction 33 48 - -
Stsc151048g00023 388 FunFam proline-rich receptor-like protein kinase PERK1 64 161 - -
Stsc151048g00023 388 SMART serkin_6 86 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151048g00023 388 ProSiteProfiles Protein kinase domain profile. 86 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151048g00023 388 MobiDBLite consensus disorder prediction 1 54 - -
Stsc151048g00023 388 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
Stsc151048g00023 388 Pfam Protein tyrosine and serine/threonine kinase 90 353 IPR001245 GO:0004672|GO:0006468
Stsc151048g00023 388 MobiDBLite consensus disorder prediction 361 388 - -
Stsc151048g00023 388 MobiDBLite consensus disorder prediction 361 380 - -
Stsc151048g00023 388 Gene3D Phosphorylase Kinase; domain 1 58 161 - -
Stsc151048g00023 388 SUPERFAMILY Protein kinase-like (PK-like) 67 354 IPR011009 -
Stsc151048g00023 388 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 40 374 IPR047117 -
Stsc151048g00023 388 FunFam Proline-rich receptor-like protein kinase PERK1 162 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151048g00023 Stsc-Chr151048 138681 141009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151048g00023 37 381 Trihelix Transcription Factor Family AT5G38560 58.242 1.72e-148 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc151048g00023 PK_Tyr_Ser-Thr 6.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151048g00023 - - qsa:O6P43_004029 568.926