Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151048g00018 ATGCATTCTCTCTCTATCTTCCCATCATTGCCTTCGCTTCAAAACCCTAACTTGGACCATGCCCGCCTTTTCAATTCCATCGGAACCCTCAATCTCACTTTAACTTCACCACCACACTCTCTTCTATTTAGGCTACACCACCATAGAATCCCGTCCCGGACGATACGCTGCAAAGTTTTGAAGGGTCCTGGGGAAGAGGTTAAGGTGGCTCTGGACTCCGACGGTGGACAAGGTGGCGACGGCGGCGATGATGGCGACGGTGGGGAGGAGAGAGAGGTGAAGAAGAAAGAAGGGTCTTCGGGGCCATTTCCTGAATGGTTGAATTTCAACTCTGATGACGCAAAGACGGTGTTTGCGGCTCTGGCTGTATCGCTTGCGTTTCGTGCGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCGTACCACTTTAGAAAGCCTTGTACAAATGATATAGTGATATTCAAAAGTCCTCCTGTCCTTCAAGAAGTTGGATATACGGATGACGATGTTTTCATAAAACGGATTGTTGCAAAGGAAGGCGATATTGTGGAGGTTCACAAAGGTCGTCTCATAGTTAACGGTGTTGAGAGGAGTGAAAAGTTCATCCTTGAACCACCTTCTTATGAAATGAAACCCATGCGTGTTCCAGAGAACTACGTCTTTGTGATGGGGGACAACCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCATTGCCAGCCAAGAATATCATCGGTAGATCAGTGTTCCGATACTGGCCTCCAAATAGAATAGCCGGAACTGTTTCGGAGGATACTTGTCCTGTTGAAACGAAGCAGGACACAAGTAGTTTTGTTTCTTCTCAATGA 903 0.4707 MHSLSIFPSLPSLQNPNLDHARLFNSIGTLNLTLTSPPHSLLFRLHHHRIPSRTIRCKVLKGPGEEVKVALDSDGGQGGDGGDDGDGGEEREVKKKEGSSGPFPEWLNFNSDDAKTVFAALAVSLAFRAFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYHFRKPCTNDIVIFKSPPVLQEVGYTDDDVFIKRIVAKEGDIVEVHKGRLIVNGVERSEKFILEPPSYEMKPMRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPVETKQDTSSFVSSQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151048g00018 300 ProSitePatterns Signal peptidases I serine active site. 139 146 IPR019756 GO:0004252|GO:0016020
Stsc151048g00018 300 MobiDBLite consensus disorder prediction 69 100 - -
Stsc151048g00018 300 ProSitePatterns Signal peptidases I signature 3. 238 251 IPR019758 GO:0004252|GO:0016020
Stsc151048g00018 300 PANTHER SIGNAL PEPTIDASE I 102 277 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151048g00018 300 SUPERFAMILY LexA/Signal peptidase 128 277 IPR036286 -
Stsc151048g00018 300 CDD S26_SPase_I 133 265 IPR019533 GO:0004252|GO:0006465
Stsc151048g00018 300 NCBIfam signal peptidase I 115 273 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151048g00018 300 Gene3D Umud Fragment, subunit A 127 284 - -
Stsc151048g00018 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 146 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151048g00018 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 189 201 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151048g00018 300 PRINTS Bacterial leader peptidase 1 (S26A) family signature 233 252 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc151048g00018 300 FunFam Peptidase/ serine-type peptidase 139 270 - -
Stsc151048g00018 300 Pfam Signal peptidase, peptidase S26 114 271 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151048g00018 Stsc-Chr151048 121254 123466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151048g00018 142 272 MADS-box Gene Family AT1G29960 31.579 4.24e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151048g00018 K03100 - gmx:100815810 390.578