Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151048g00012 ATGGGGGAAGGAGAAGGAGGTGATTGCCCTTCGACGAATGTGTCATCAGATGCGGCTACGGTGCCGGTGTCGGTGCCGCCGTCGGATATTCCCGCCAAGAAGCTTGCCAGGCAGCTCGATTTCACCGGCTTAGCCGGGATGCCGGGTGGCGCGCCATTCCCGGAACACTCGCAGTTGCAGTTGCAGTTGCAGCAGCAGCTTCAGCCGCAAGTGGTGGCACAGTCACATTCAGAGTCACAGTCACGGTCACATCCGCAGCCACTGTCGCAACCGATGGTTTTGATGCCGACGCCGCAACCGCCGCAGGCGCCACACCTTTCAACGAGGGTTGGTAAATCAGAATCTCCAAAACCAAGATCAAGGACCAATTTTGAAACAAAAGAAGCTACTCCAAAGAAACAAAAGCAATGCAATTGTAAACACTCAAAGTGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATACTGTGATGGTTGCAACTGTGTAAATTGTTACAACAATGTCGATAATGAAGCAGCTAGGCGAGAAGCTGTTGGAGCTACCTTAGAACGTAATCCAAATGCATTTAGGCCAAAAATTGCGAGCAGCCCTCATGGACCACATGACAACAGGGAGGATGCTGGCGAAGTTGTTATATTGGGAAAGCACAATAAGGGATGTCATTGTAAAAAGTCTGGCTGCCTCAAGAAGTATTGTGAGTGTTTCCAAGCCAACATTCTTTGTTCCGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCATTGTTCCATGGAGATCAAAATACCAACATGACGTATATTCAGCAAGCAGCAAATGCTGCGATAACTGGTGCTGTCGGTTCCTCTGGCTTTTCATCACCACCATTATTATCAAAGAAAAGAAAAGGTCAGGAACACTCTTTTGTGCCAACGGCCAAGGATCCTTCTATTGGGAAGCTAGGAAAACAGGCAAACCATGTCAAAGGTCCGGCACCCTCTTCTTCCTTTTCTTCCGCCCCTAGTGCTCATGTTGGAACTGCAACATTAGGTCCTTCAAAAGTTATATACAGGTCTGTATTGGCAGACATACTACAACCAGAGCACCTAAAGGAGCTTTGCTCAGTTCTAGTGCTACTATCTGGACAAGCCTCAAAGACAGTAACAGACCAGAAAAATATATTGCGCAAACATATAGAAGATCAGACAGAACCTTCCCTTGCTTCTTCAACTCAAGAACAGTTACCAAGCCAAAAGGGAGCTGATGTCGAGAAAGCTACATCTGATGATGGTTCAAGTGAGAACCGAATAGATAAGGTCAGCTCAGATAATTCTAGTTCAGACGGTGTTGGTGTCCTCAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTAATAGATTTTCTTAATAGAGTTATCACTATGGGAGAAATAAACGAAACAAAATATTCTTCATTAGCAAGAAGTGAATTGGAGAGTGATAGGGACCCAATCGTCAATGGCACTGAAAATGCTGGAAATGAGACAGCAGATCAAGCAGCCACAAAAAATGGTGTTATCAAAGCTGTTGTTCATCCTCTGGCAGCAAGTAGGAGTTTGACTGATTCAATATCTTTGGTCCATAGTAATCTTGTTCCTGAAAATGGTGAAAAAGAGGTATGA 1665 0.4492 MGEGEGGDCPSTNVSSDAATVPVSVPPSDIPAKKLARQLDFTGLAGMPGGAPFPEHSQLQLQLQQQLQPQVVAQSHSESQSRSHPQPLSQPMVLMPTPQPPQAPHLSTRVGKSESPKPRSRTNFETKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVGATLERNPNAFRPKIASSPHGPHDNREDAGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNTNMTYIQQAANAAITGAVGSSGFSSPPLLSKKRKGQEHSFVPTAKDPSIGKLGKQANHVKGPAPSSSFSSAPSAHVGTATLGPSKVIYRSVLADILQPEHLKELCSVLVLLSGQASKTVTDQKNILRKHIEDQTEPSLASSTQEQLPSQKGADVEKATSDDGSSENRIDKVSSDNSSSDGVGVLKGRPMSPGTLALIDFLNRVITMGEINETKYSSLARSELESDRDPIVNGTENAGNETADQAATKNGVIKAVVHPLAASRSLTDSISLVHSNLVPENGEKEV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151048g00012 554 PANTHER TESMIN/TSO1-RELATED 60 458 IPR028307 -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 405 419 - -
Stsc151048g00012 554 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 220 254 IPR005172 -
Stsc151048g00012 554 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 134 169 IPR005172 -
Stsc151048g00012 554 ProSiteProfiles CRC domain profile. 133 257 IPR005172 -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 1 128 - -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 112 128 - -
Stsc151048g00012 554 SMART CXC_2 217 258 IPR033467 -
Stsc151048g00012 554 SMART CXC_2 132 172 IPR033467 -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 317 345 - -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 424 438 - -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 330 345 - -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 400 457 - -
Stsc151048g00012 554 MobiDBLite consensus disorder prediction 57 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151048g00012 Stsc-Chr151048 93409 97489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151048g00012 30 527 CPP Transcription Factor Family AT4G29000 48.940 1.03e-156 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc151048g00012 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151048g00012 - - qsa:O6P43_004012 676.781