Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151048g00002 ATGTCTGCAGAAAAGGGGTATGCAGGGCTGGGAGAGGTTGCTGCAATGGGAGAAACCATTGGCTTGAACCTCAAAGAAACTGAGTTGAGGCTTGGCTTGCCCGGTTCAGACTCACCGGTCAAGACTACTACTAGTTTGGGGGCAAAGAGAGGTTTCTCAGACGCCATTGATGGCAAGTGGGTTCTCTCTGGGAATGGGAATGCCAACCAAAGTGGATCTGACTTGGCTTTGGCTAAAGATGCTTCCTTGTTCTCTTCTCCCTCTGACAAAACCAACAAAGACACTCTTCCACTTCCACAACCTTCAAAGCCTGTTCCTGCTCCTGCTTCAAAGGCACAAGTTGTTGGATGGCCACCGATCCGTTCATTCAGGAAGAACTCAATGGCTACTCAGCCTCCTCAAAAGAATGAAGCTGATGCAGAACCCAAACCCGGATGCCTTTATGTCAAAGTCAGCATGGATGGCGCCCCATACTTAAGGAAAATGGATCTCAACAATTATGCCTCATATAGGGACCTCTCTTCAGCACTTGAAAAGATGTTTAGTTGTTTTACTCTCAGTCAATGTGGCGCTCATGGGGTTTCAAGCCGAGATAATTCAAGCGAAAGCAAATTGAGGGATCTCCTGCATGGCTCAGAATACGTGCTCACCTATGAAGACAAGGATGGCGATTGGATGCTCGTCGGTGATGTTCCTTGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGTTAGCACCTAGAGCCATGGAAAAGTGCAGAAGTCGCAATTAG 801 0.4757 MSAEKGYAGLGEVAAMGETIGLNLKETELRLGLPGSDSPVKTTTSLGAKRGFSDAIDGKWVLSGNGNANQSGSDLALAKDASLFSSPSDKTNKDTLPLPQPSKPVPAPASKAQVVGWPPIRSFRKNSMATQPPQKNEADAEPKPGCLYVKVSMDGAPYLRKMDLNNYASYRDLSSALEKMFSCFTLSQCGAHGVSSRDNSSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCRSRN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151048g00002 266 Gene3D - 141 259 - -
Stsc151048g00002 266 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 253 IPR003311 GO:0005634|GO:0006355
Stsc151048g00002 266 FunFam Auxin-responsive protein 141 258 - -
Stsc151048g00002 266 Pfam AUX/IAA family 26 257 IPR033389 -
Stsc151048g00002 266 MobiDBLite consensus disorder prediction 86 112 - -
Stsc151048g00002 266 ProSiteProfiles PB1 domain profile. 146 248 IPR000270 GO:0005515
Stsc151048g00002 266 SUPERFAMILY CAD & PB1 domains 142 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151048g00002 Stsc-Chr151048 2281 4782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151048g00002 150 256 B3 DNA Binding Superfamily AT4G23980 30.841 1.48e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc151048g00002 AUX_IAA 9.8e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151048g00002 K14484 - gmx:100803754 337.035