Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151047g00043 ATGGGATCACCAGAATCAAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAAGAACTCATTCTTCACTACCTTAGGAAGAAGGTAGCATCCATACCCTTGCCTGTTTCCATCATTGCTGAGGTTGATATCTACAAATTGAATCCATGGGAATTACCAGCTAAGGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGCCCAAGGGACCGGAAATATCCAAACGGTGCGAGGCCAAACAGGGCAGCTGCTTCAGGGTACTGGAAGGCCACCGGTACAGACAAGACCATCGTGGTGTCACCGGCGACGGTGGCACGAAGAGTAGTAGGCCAAGAGAGCAGCGTTGGTGTGAAGAAGGCTCTTGTCTTCTACAAAGGAAGGCCTCCAAAGGGTATCAAGACCAATTGGATCATGCACGAGTATCGCCTTGTGGACAACAATAGGCCCATTAAGCTCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTTTGTCGGATTTATAAGAAATCCAAATTCTCACTATCTTCACTGGAAGAATCATCACCGTCAAATATAACAGGCGATCAAGTTCAAGCAGCAGAAGAAGATAGTTTATTTAAAGAAACCATTTTGAAGAGTCCAATTCCAATGCCATCGCCGCCGCTACCGCCACCGTCATTGCTGTCTCAAAAATCTGTGTCCTTCTCAAACCTCTTAGATGCCATGGACTACTCCATGCTCAGCTCCATCTTATCTGAGAACAATAACAATAACAACAGCAGCCTTGATCATCAGCAACAATACTCATCATCACAATCTTCACAGATCAACACAAACATTAACACCAACCAATTGAACAATTCATCATCATTGCTTCCCAACAACATGGAGAACAGTTACAGCAACACCATGATGATGAAGTCTTCAAAACGCCAGCTTTCAAACATGGAGGATGAAACAATGACAGTGTTGCACCCATCAAAGAAGTACCATCATAACCACCACCACCACTTTATGGGCTCTTCTTCTTGCAGCTTCCCTAATAATATTAACAACACAATAAACACTGCACAATTCGAGAACCCACAATGGAACTACCTTGTCAAGCAATCTTTCTTGAACCAGCAGTTACTACTCGGTCCTCATCTTCAATTTCAAGGTTAG 1149 0.4421 MGSPESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLNPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSPATVARRVVGQESSVGVKKALVFYKGRPPKGIKTNWIMHEYRLVDNNRPIKLKDTSMRLDDWVLCRIYKKSKFSLSSLEESSPSNITGDQVQAAEEDSLFKETILKSPIPMPSPPLPPPSLLSQKSVSFSNLLDAMDYSMLSSILSENNNNNNSSLDHQQQYSSSQSSQINTNINTNQLNNSSSLLPNNMENSYSNTMMMKSSKRQLSNMEDETMTVLHPSKKYHHNHHHHFMGSSSCSFPNNINNTINTAQFENPQWNYLVKQSFLNQQLLLGPHLQFQG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151047g00043 382 Gene3D NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Stsc151047g00043 382 FunFam NAC transcription factor 56 17 176 - -
Stsc151047g00043 382 Pfam No apical meristem (NAM) protein 9 144 IPR003441 GO:0003677|GO:0006355
Stsc151047g00043 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 297 - -
Stsc151047g00043 382 SUPERFAMILY NAC domain 5 171 IPR036093 GO:0003677|GO:0006355
Stsc151047g00043 382 MobiDBLite consensus disorder prediction 250 295 - -
Stsc151047g00043 382 ProSiteProfiles NAC domain profile. 8 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151047g00043 Stsc-Chr151047 289517 291417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151047g00043 4 382 NAC Transcription Factor Family AT3G04070 46.859 1.33e-99 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151047g00043 NAM 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151047g00043 - - ahf:112754912 499.204