Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151047g00029 ATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCTGAAGCTATACCTCATGACACCCTTTCTCGGCTCTTATCTCATTATGGTGCTTCTTCTGTTCGTCCTTGCCTTACTGGAAGGTTGAGGAATTGTGCTTTTGTGGATTTCAAAAATGAAATGCTGGCCTCTCAAGCACAACGTCAACTAAATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGTAGAGAGAGCTAATAATCCAATGGAGAGCGGTGAAAAAGGCAGTGTAGCTCAGCCTGGAAAGGACTCTAAAACAACCATGGATAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGCTTCCCTGTTGCTGAGCCAATTGCTGAAAGACTTGGTGTCGACTATCCATTTCCACCTCACCTTACGTATGCTTACCCTCCACCAGATGGAAATATATTGACCAACATTGTCAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCGGTGCCAGCCCCACCACCTCCCCCTCCTCCTGTACCTGTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCGGAAGAGGAGGTAGGGCCAACAACAGAAAAGCCTAAGAAGAAGCGTGCCAGGCGCGAGACAATTATTGGCCCTGCGATTGATAAAGATATCGCTCATGAGGATGTTGGAGTAAAACCAGCTACCTTAGTCCCAAAAGAAATCCCATTAATAAAAAAGAAGAACCCTGTGTTGCAGATCAATATTGCTCCCAAAGAAAGTAAGGATGAGCATAAAAATGATGACACAAGGCAAGATTTACAGGAGCCAGAAAAAGATAGTCCTGATCCACATAAATTTTTAACTCCAGAAGAATTGGAGAGAGGAAAGTTGCCTCCTGAGGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCGAAAGATGTGGTTGGTGAAGATTTTTTTATCATATTCGGGTCCTTGTTTGGAAGTATTGAGGCCGCCAAGTCTTGTCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTAGCTCATCAGGGCCTGAATCTAGTGAATGGATATGTATTTAAAGGAAAGCCAATGATAATTCAGTTTGGTCGGAATCCTGGTGCCGCTAAAGGAACTTGA 1311 0.4302 MDSPVTLLIKHLPEAIPHDTLSRLLSHYGASSVRPCLTGRLRNCAFVDFKNEMLASQAQRQLNGLRLLGKVLSVERANNPMESGEKGSVAQPGKDSKTTMDKDTTVTKAIDGDTKSGCFPVAEPIAERLGVDYPFPPHLTYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPAVPAPPPPPPPVPVKPQSADLSSGESEMESSEEEVGPTTEKPKKKRARRETIIGPAIDKDIAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKESKDEHKNDDTRQDLQEPEKDSPDPHKFLTPEELERGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVVGEDFFIIFGSLFGSIEAAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGAAKGT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151047g00029 436 Gene3D - 342 435 IPR012677 -
Stsc151047g00029 436 Gene3D - 4 88 IPR012677 -
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 286 322 - -
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 78 100 - -
Stsc151047g00029 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 429 IPR000504 GO:0003723
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 226 248 - -
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 284 322 - -
Stsc151047g00029 436 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 342 436 - -
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 192 208 - -
Stsc151047g00029 436 PANTHER UNCHARACTERIZED 4 432 IPR045164 -
Stsc151047g00029 436 SUPERFAMILY RNA-binding domain, RBD 5 430 IPR035979 GO:0003676
Stsc151047g00029 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 72 IPR000504 GO:0003723
Stsc151047g00029 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 421 IPR000504 GO:0003723
Stsc151047g00029 436 MobiDBLite consensus disorder prediction 192 248 - -
Stsc151047g00029 436 CDD RRM2_RBM40_like 348 427 - -
Stsc151047g00029 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Stsc151047g00029 436 SMART rrm1_1 348 425 IPR000504 GO:0003723
Stsc151047g00029 436 SMART rrm1_1 6 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151047g00029 Stsc-Chr151047 179764 186516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151047g00029 349 425 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 3.00e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151047g00029 K13157 - gmx:100818499 629.787