Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151047g00020 ATGAACATGGAGGCTGAGTTGCAGAAAGAGCAACAAGTGCTTCTTCTTGCTGACCCTTCTTCTACCTCTTCAACCACCCTTGATGACCTCTTCAATCCACACAACACGGAAGTGGATGTTGGGTTGGAATGGTTATCAGTTCTTGTTGAAGACTGTTTTTCAAACCCACCAAGCTATATATTGGGACCTTCTTCAAAGACTGTTGTTGAGGCCAAAACAACAACCACCATAACTACTACTTGCTCCACCAACAAGAACAACCCTTCTTCATCTTCTAATTCTTCTTCCTCAACCACACTGCTGAAGCAAAACACCTTCTCAGTCCCTTGTAAGGCCAGAAGCAAAAGAAAGAGGCTCTCATCAGCAGCAGCAGTTACCAATAACAGAAGAACCAAAACCCTTTTCAGCATTTGGTCACACCAGAACGATGAGCCCTTGATTTCAGACCCTCCTTTGTTAAAACAAACTTATTGGCTAGCAGATAGTGAACTCTTTGTTTTGCCAAATCAGCAGAAGGAGGATGAAAAGGGGGTGGTGGTGATGAAGAGGGAAAGTGTTGACCATGGTGGTGATGATGATGACGGTGGTGGTGGGAATAATAATAATAGTAACAATAACAAGAGTAGTAATGGTGAGAATCCAATGCCAAGAAGGTGCACACATTGTTTGGCGCAGAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTACCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTAAGCTACTTGCATTCCAATTCTCACAAGAAAGTTTTGGAGATGAGGATGGCTGCCTCTACTTAA 861 0.4413 MNMEAELQKEQQVLLLADPSSTSSTTLDDLFNPHNTEVDVGLEWLSVLVEDCFSNPPSYILGPSSKTVVEAKTTTTITTTCSTNKNNPSSSSNSSSSTTLLKQNTFSVPCKARSKRKRLSSAAAVTNNRRTKTLFSIWSHQNDEPLISDPPLLKQTYWLADSELFVLPNQQKEDEKGVVVMKRESVDHGGDDDDGGGGNNNNSNNNKSSNGENPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRMAAST 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151047g00020 286 MobiDBLite consensus disorder prediction 185 218 - -
Stsc151047g00020 286 FunFam GATA transcription factor 207 286 - -
Stsc151047g00020 286 Pfam GATA zinc finger 219 253 IPR000679 GO:0006355|GO:0043565
Stsc151047g00020 286 Gene3D - 209 278 IPR013088 GO:0006355|GO:0008270
Stsc151047g00020 286 MobiDBLite consensus disorder prediction 196 215 - -
Stsc151047g00020 286 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Stsc151047g00020 286 SMART GATA_3 213 267 IPR000679 GO:0006355|GO:0043565
Stsc151047g00020 286 ProSiteProfiles GATA-type zinc finger domain profile. 217 249 IPR000679 GO:0006355|GO:0043565
Stsc151047g00020 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 276 - -
Stsc151047g00020 286 PANTHER GATA TRANSCRIPTION FACTOR 17 284 - -
Stsc151047g00020 286 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Stsc151047g00020 286 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151047g00020 Stsc-Chr151047 107084 108705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151047g00020 42 281 C2C2-Gata Transcription Factor Family AT5G25830 35.950 1.38e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc151047g00020 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151047g00020 - - adu:107494524 379.407