Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151046g00035 ATGAGCTCTTCCTCTAATGCAAGTACTCGGCTGAGCTCCAAAAGGAAAGAACGTACGATGGTCGGAGCTTGGAACGGCGTGGGAGTAGACCTGCAAAGTCACTCCAACGCTCAAGTCAGTAAGGAAATCACTTGTGAGTATAATTTACCTCCTTCACGGTCTACTTATGTGCCTCCGCATCTGAGGAACCGGCCTCCATCAGCTGAATCATCTGCCCCTCCAAGTAGTGGTAGTGCAACTTCTGGTTCTGGGGCGGGTACAGCTAATGCTGGATCGCGTTGGGGTGCACCTCGTGGCGGTGAGTACCGTTCAGGGGGTGGTGGTGGCAGAGGAAGTGGATGGGGGAACAGAAGTGGGGGTTGGGATCGCGGAAGGGACCGTGAGGTCAATCCGTTTGGAGATCAGGATGATACAGAGGAAGCATTTAATGAGCAAGAGAACTCGGGGATAAATTTTGATGCCTATGAGGACATTCCGGTGGAGACAAGTGGGGATAATGTGCCACCACCTGTGAATACATTTGCTGAGATTGACTTGGGTGAAGCGCTTAATGCTAATATAACAAGGTGCAAATACGTTAAGCCGACACCTGTTCAGCGGCATGCAATACCGATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCACAGACCGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCGATTATCAGTGGAATTTTGAGGGGCCAACCTGTGCAAAGGCCACCTCGCGGGGTGCGTACTGTTTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAACTACGAGATCTTGAGAAGGGGGTGGACATTCTTGTTGCCACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTAGCACTTGATGAGGCAGATAGGATGCTGGATATGGGTTTCGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCTCCTCCAGGTGTCAGACAAACAATGCTATTCAGTGCGACGTTTCCTAAAGAGATACAGAGACTAGCCTCCGATTTCCTGTCAAACTACATTTTTCTCGCTGTTGGAAGAGTTGGGTCGAGTACCGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTTCATGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCCGATGCACTGGAACATTGGCTGTGCATGAATGGTTTTCCAGCTACTACTATTCATGGAGACAGGACCCAGCAGGAAAGAGAAATGGCATTAAGGTCGTTTAAGAGTGGGAACACGCCCATATTGGTTGCCACCGATGTGGCTGCACGCGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCCAATGACATTGATGACTATGTACATCGTATTGGAAGGACAGGACGTGCTGGAAAGAAAGGCCTCGCAACTGCATTCTTTAACGACAACAATGCATCGCTTGCAAGGTCTTTAGCAGAACTAATGCAGGAAGCAAACCAAGAAGTGCCTGCATGGCTCTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGCCGTTCGGGAGGAGGGCGTTTTGGTGGCCGAGACTTTCGAAGAGAAGGTTCCTTCAATAGGAGTGGTTCTGATTACTACAATGCAGGAAACAACAGTGGTGGATATGGTGGTGGATATGGTCCTGGCGCATCAAGTGCCTGGGATTGA 1791 0.4863 MSSSSNASTRLSSKRKERTMVGAWNGVGVDLQSHSNAQVSKEITCEYNLPPSRSTYVPPHLRNRPPSAESSAPPSSGSATSGSGAGTANAGSRWGAPRGGEYRSGGGGGRGSGWGNRSGGWDRGRDREVNPFGDQDDTEEAFNEQENSGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNANITRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPVQRPPRGVRTVYPLALVLSPTRELSMQLRDLEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVHGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGSFNRSGSDYYNAGNNSGGYGGGYGPGASSAWD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151046g00035 596 Gene3D - 267 362 IPR027417 -
Stsc151046g00035 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 142 538 - -
Stsc151046g00035 596 CDD DEADc_DDX3_DDX4 173 366 IPR044763 GO:0003724|GO:0005524
Stsc151046g00035 596 Gene3D - 363 542 IPR027417 -
Stsc151046g00035 596 SMART ultradead3 191 375 IPR014001 -
Stsc151046g00035 596 MobiDBLite consensus disorder prediction 68 88 - -
Stsc151046g00035 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 172 200 IPR014014 GO:0003724
Stsc151046g00035 596 SMART helicmild6 418 499 IPR001650 -
Stsc151046g00035 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 360 IPR014001 -
Stsc151046g00035 596 MobiDBLite consensus disorder prediction 120 134 - -
Stsc151046g00035 596 MobiDBLite consensus disorder prediction 46 150 - -
Stsc151046g00035 596 CDD SF2_C_DEAD 372 508 - -
Stsc151046g00035 596 Pfam DEAD/DEAH box helicase 266 349 IPR011545 GO:0003676|GO:0005524
Stsc151046g00035 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 515 IPR027417 -
Stsc151046g00035 596 Pfam Helicase conserved C-terminal domain 384 499 IPR001650 -
Stsc151046g00035 596 FunFam ATP-dependent RNA helicase RhlB 362 542 - -
Stsc151046g00035 596 MobiDBLite consensus disorder prediction 577 596 - -
Stsc151046g00035 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 538 IPR001650 -
Stsc151046g00035 596 Gene3D - 123 266 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151046g00035 Stsc-Chr151046 274900 281544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151046g00035 170 531 Eukaryotic Initiation Factors Gene Family AT3G19760 31.218 7.55e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151046g00035 K11594 - gmx:100795756 846.654