Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00044 ATGCAAACACTGGCAGATACTTCTTCATGCACCGATTGTTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAATGGTGCATGCGGGTTTGGTTCCTTTGGTGCTTTGGTGAACGGCGGCGACGTATCAGCCGCATCTAGTCTTTATCGAAATGGCGTTGGCTGTGGCGCCTGTTACCAGGTGAGGTGTACGAAGAGTGGGTATTGCTCGGATAACGGTGTGACTGTTGTGATAACAGACCAAGGGTCAAGTGATAACACTGATTTCATTCTCAGTGAACATGCCTTTGATAGGATGGCTCAGACCACTGATGCAGCTTCTTATCTCTTAGCCCTTGGTGTTCTTGATATTCAGTATAGACGTGTTGCATGCAGTTATCCACATGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACCCTAATTATCTGGCTTTTGTGATTTGGTATCAACAAGGAATCAGAGACATAACTGCTGTTCAGCTTTGTGAGACTGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGCCACGGTGCAGTGTGGACTAGCATCTCTCCTCCAAGTGGACCATTGTCTATAAGAATGTTGTTTAGTGATGAAGATGAGCAGAGTGAAGAATGGGTTGTTCCTCCTAATAACTTACCTGCAGATTGGAAGCCTGGTCAAACATACGATTCCGGCATACAAGTTAATTAA 720 0.4458 MQTLADTSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGALVNGGDVSAASSLYRNGVGCGACYQVRCTKSGYCSDNGVTVVITDQGSSDNTDFILSEHAFDRMAQTTDAASYLLALGVLDIQYRRVACSYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCETENFECKLLDRSHGAVWTSISPPSGPLSIRMLFSDEDEQSEEWVVPPNNLPADWKPGQTYDSGIQVN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00044 239 CDD DPBB_EXLB_N 15 131 - -
Stsc151045g00044 239 SUPERFAMILY PHL pollen allergen 137 234 IPR036749 -
Stsc151045g00044 239 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Stsc151045g00044 239 PRINTS Expansin/Lol pI family signature 119 135 IPR007118 GO:0005576
Stsc151045g00044 239 PRINTS Expansin/Lol pI family signature 13 28 IPR007118 GO:0005576
Stsc151045g00044 239 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Stsc151045g00044 239 SUPERFAMILY Barwin-like endoglucanases 8 135 IPR036908 -
Stsc151045g00044 239 Pfam Expansin C-terminal domain 138 212 IPR007117 -
Stsc151045g00044 239 PANTHER EXPANSIN-B3 16 237 - -
Stsc151045g00044 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 234 IPR007117 -
Stsc151045g00044 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 136 IPR007112 -
Stsc151045g00044 239 Gene3D - 134 238 IPR036749 -
Stsc151045g00044 239 Pfam Lytic transglycolase 52 126 IPR009009 -
Stsc151045g00044 239 Gene3D - 2 132 IPR036908 -
Stsc151045g00044 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00044 Stsc-Chr151045 251312 252812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00044 11 236 Expansin Gene Family AT4G17030 44.493 7.72e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00044 - - ccaj:109799868 418.313