Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00036 ATGGACTATCATGTTTCTACCTTCTATGATGAGAATGAAGCCTTGTCAGAAATTTCAAATAGACTCGAAGGATTCCATGTTGCCATTGTGGAGGTGAGTACAAGCAGCAGCCAGAGTGGTTTTAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACTTCGGATAATCAGTGCCTGAGCACTATGATGAAGTGCATTGCGCTTGGTGCTGTTGAATTCCTATGTAAACCACTTTCTGAGGATAAACTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAATGGTGGGGCAAGTGTATTGTCCGAATCACTAAAACCGGTTAAAGAGTCTGTAGAATCCATATTTCAGCTCCAAACAGATAATGGAAGGCATGATGATAGTAGAATTTCCATTGATTTAGAGAATATATCAAGGTCTAGTGACAATGACCGGGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACACCACAATTAAAGCAGGGAGCAAGGTTGCTGGATGATGGTGATTGCCAAGAGCATACGAATTGCTCGAATGAGAAAGAAAGTGGGGAACATGAAGGGGAATCGAAATCTGTCGAAACATCAAGTGAGAATTTGAATGAAGGTACTCATCAACCAGAGAAACCTGAAAGGGGTCTAATTAAACAGGAAGAGGATTTTCTTGCCAATGGTTCCAATGGCGAAAGTACTGATTCTCCGAATCCTCATGATAGAAGGCCTCTCAGCAGCACTGATGGCAATATTACATCTTCAAATAAAGCAGTGATTCTTAAAGATACATGTGAAAACAAAGCTACTCGGAAGAAGTTGAAAGTAGAGTGGACAACCGAGTTGCACAAAAAGTTTGTGCAAGCAGTGGAACAACTAGGAGTTGATCAAGCCATTCCTTCTCGCGTTCTCGAGCTGATGAAAGTAGAAGGCTTGACAAGACATAATGTAGCAAGCCATCTTCAGAAATATAGACTACACAAGAGACAAATGATGCCCAGGGAAGAAGATCATAGATGGCAAAATCAGAGAGATTCGGTGCGCTTGAAAAGACCAATTATGGCCTATCCTCCACATCATTATAATCATGGCCTATCTCCACCTCCTATATATCCAATGTGGGGACAACCCGGCGGCCAAACAACCAATCCACAGTTTTGGGGACCTCCTGCTTATACCTGGTGGCAGCCTACAGAAAATTGGCACTGGAATCCTTTTCCGGGGGTTCATGTGGATGCATGGGGTTGCCCAGTGTTTCCAGCTACTCAAGCTCCTTACCATTCCTACACTCAACATATGGCTGGATTGCACATCAATGGTAAATCGGCGGATTATAGATACGGCACGCCACCAAGTTCGTTTGAGCATTATCCGGCAGATGAAGTGGTTGACAAAGTTGTAAAGGAAGCAATAAGCAAGCCATGGCTACCATTACCATTGGGCCTTAAGCCGCCTTCCACCGACAGCGTGTTGGCCGAGCTCTCCAGGCAAGGCATATCCCCCAAGCCTCATGGCTCCAAGGGCTCTAAACCTAGATAG 1548 0.4432 MDYHVSTFYDENEALSEISNRLEGFHVAIVEVSTSSSQSGFKFLENAKDLPTIMTSDNQCLSTMMKCIALGAVEFLCKPLSEDKLRNIWQHVVHKAFNGGASVLSESLKPVKESVESIFQLQTDNGRHDDSRISIDLENISRSSDNDREQSAGSDKYPAPSTPQLKQGARLLDDGDCQEHTNCSNEKESGEHEGESKSVETSSENLNEGTHQPEKPERGLIKQEEDFLANGSNGESTDSPNPHDRRPLSSTDGNITSSNKAVILKDTCENKATRKKLKVEWTTELHKKFVQAVEQLGVDQAIPSRVLELMKVEGLTRHNVASHLQKYRLHKRQMMPREEDHRWQNQRDSVRLKRPIMAYPPHHYNHGLSPPPIYPMWGQPGGQTTNPQFWGPPAYTWWQPTENWHWNPFPGVHVDAWGCPVFPATQAPYHSYTQHMAGLHINGKSADYRYGTPPSSFEHYPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISPKPHGSKGSKPR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00036 515 Gene3D - 272 334 - -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 210 224 - -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 123 152 - -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 229 257 - -
Stsc151045g00036 515 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 506 IPR044825 GO:0003700|GO:0045893
Stsc151045g00036 515 Gene3D - 1 99 - -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 122 257 - -
Stsc151045g00036 515 ProSiteProfiles Response regulatory domain profile. 1 93 IPR001789 GO:0000160
Stsc151045g00036 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 273 332 IPR017930 -
Stsc151045g00036 515 FunFam Two-component response regulator 272 335 - -
Stsc151045g00036 515 SUPERFAMILY CheY-like 2 94 IPR011006 -
Stsc151045g00036 515 SUPERFAMILY Homeodomain-like 274 333 IPR009057 -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 172 199 - -
Stsc151045g00036 515 Pfam Myb-like DNA-binding domain 278 328 IPR001005 -
Stsc151045g00036 515 MobiDBLite consensus disorder prediction 486 515 - -
Stsc151045g00036 515 NCBIfam myb-like DNA-binding domain, SHAQKYF class 276 331 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00036 Stsc-Chr151045 215401 219377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00036 1 509 Response Regulator Gene Family AT4G18020 48.582 8.76e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc151045g00036 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00036 - - ahf:112747948 908.286