Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00035 ATGGTGAGTACAAGCAGCAGCCAGAGTGGTTTTAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACTTCGGATAATCAGTGCCTGAGCACTATGATGAAGTGCATTGCGCTTGGTGCTGTTGAATTCCTATGTAAACCACTTTCTGAGGATAAACTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAATGGTGGGGCAAGTGTATTGTCCGAATCACTAAAACCGGTTAAAGAGTCTGTAGAATCCATATTTCAGCTCCAAACAGATAATGGAAGGCATGATGATAGTAGAATTTCCATTGATTTAGAGAATATATCAAGGTCTAGTGACAATGACCGGGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACACCACAATTAAAGCAGGGAGCAAGGTTGCTGGATGATGGTGATTGCCAAGAGCATACGAATTGCTCGAATGAGAAAGAAAGTGGGGAACATGAAGGGGAATCGAAATCTGTCGAAACATCAAGTGAGAATTTGAATGAAGGTACTCATCAACCAGAGAAACCTGAAAGGGGTCTAATTAAACAGGAAGAGGATTTTCTTGCCAATGGTTCCAATGGCGAAAGTACTGATTCTCCGAATCCTCATGATAGAAGGCCTCTCAGCAGCACTGATGGCAATATTACATCTTCAAATAAAGCAGTGATTCTTAAAGATACATGTGAAAACAAAGCTACTCGGAAGAAGTTGAAAGTAGAGTGGACAACCGAGTTGCACAAAAAGTTTGTGCAAGCAGTGGAACAACTAGGAGTTGATCAAGCCATTCCTTCTCGCGTTCTCGAGCTGATGAAAGTAGAAGGCTTGACAAGACATAATGTAGCAAGCCATCTTCAGAAATATAGACTACACAAGAGACAAATGATGCCCAGGGAAGAAGATCATAGATGGCAAAATCAGAGAGATTCGGTGCGCTTGAAAAGACCAATTATGGCCTATCCTCCACATCATTATAATCATGGCCTATCTCCACCTCCTATATATCCAATGTGGGGACAACCCGGCGGCCAAACAACCAATCCACAGTTTTGGGGACCTCCTGCTTATACCTGGTGGCAGCCTACAGAAAATTGGCACTGGAATCCTTTTCCGGGGGTTCATGTGGATGCATGGGGTTGCCCAGTGTTTCCAGCTACTCAAGCTCCTTACCATTCCTACACTCAACATATGGCTGGATTGCACATCAATGGTAAATCGGCGGATTATAGATACGGCACGCCACCAAGTTCGTTTGAGCATTATCCGGCAGATGAAGTGGTTGACAAAGTTGTAAAGGAAGCAATAAGCAAGCCATGGCTACCATTACCATTGGGCCTTAAGCCGCCTTCCACCGACAGCGTGTTGGCCGAGCTCTCCAGGCAAGGCATATCCCCCAAGCCTCATGGCTCCAAGGGCTCTAAACCTAGATAG 1458 0.4465 MVSTSSSQSGFKFLENAKDLPTIMTSDNQCLSTMMKCIALGAVEFLCKPLSEDKLRNIWQHVVHKAFNGGASVLSESLKPVKESVESIFQLQTDNGRHDDSRISIDLENISRSSDNDREQSAGSDKYPAPSTPQLKQGARLLDDGDCQEHTNCSNEKESGEHEGESKSVETSSENLNEGTHQPEKPERGLIKQEEDFLANGSNGESTDSPNPHDRRPLSSTDGNITSSNKAVILKDTCENKATRKKLKVEWTTELHKKFVQAVEQLGVDQAIPSRVLELMKVEGLTRHNVASHLQKYRLHKRQMMPREEDHRWQNQRDSVRLKRPIMAYPPHHYNHGLSPPPIYPMWGQPGGQTTNPQFWGPPAYTWWQPTENWHWNPFPGVHVDAWGCPVFPATQAPYHSYTQHMAGLHINGKSADYRYGTPPSSFEHYPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISPKPHGSKGSKPR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00035 485 Gene3D - 7 66 - -
Stsc151045g00035 485 NCBIfam myb-like DNA-binding domain, SHAQKYF class 246 301 IPR006447 GO:0003677
Stsc151045g00035 485 Pfam Myb-like DNA-binding domain 248 298 IPR001005 -
Stsc151045g00035 485 FunFam Two-component response regulator 242 305 - -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 142 169 - -
Stsc151045g00035 485 ProSiteProfiles Response regulatory domain profile. 1 63 IPR001789 GO:0000160
Stsc151045g00035 485 PANTHER TRANSCRIPTION ACTIVATOR GLK1 7 476 IPR044825 GO:0003700|GO:0045893
Stsc151045g00035 485 Gene3D - 242 304 - -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 199 227 - -
Stsc151045g00035 485 SUPERFAMILY CheY-like 17 64 IPR011006 -
Stsc151045g00035 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 302 IPR017930 -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 180 194 - -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 92 227 - -
Stsc151045g00035 485 SUPERFAMILY Homeodomain-like 244 303 IPR009057 -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 93 122 - -
Stsc151045g00035 485 MobiDBLite consensus disorder prediction 460 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00035 Stsc-Chr151045 215042 219377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00035 2 479 Response Regulator Gene Family AT4G18020 47.791 4.08e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc151045g00035 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00035 - - ahf:112747948 846.654