Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00020 ATGGGAGGGGCATCACTGCCTCCAGGTTTTCGTTTCCACCCAACTGATGAAGAACTGATAGGATACTACCTGAAAAGAAAAGTTGATGAGCTTGAAATTGAACTTGAAGTTATTCCTGTGATTGATTTGTACAAGTTTGATCCTTGGGAGTTGCCGGAGAAATCATTCCTTCCAAAGAGAGACTTGGAATGGTTCTTCTTTTGCCCAAGGGATCGAAAGTATCCGAATGGTTCAAGAACAAACAGAGCTACCAAAGCTGGATACTGGAAAGCCACTGGAAAAGACAAGAAGGTTGTGTCCCAATCTAATCCATCAACATCAATCATGAAAGCCACCGGATATCGCAAGACCCTTGTTTTCTACCGTGGAAGAGCCCCTTTAGGAGATCGAACCGATTGGGTTATGCACGAGTATCGCCTCTGCGATGATCTTGGCCAAGACTCACCAAGTTTTCAGGGTGCTTATGCTTTGTGCCGGGTTATTAAGAAGAATGACAAGGACAAGGCTAGTGATTACAAGGGTAAAAGAGGTATCAGCAGTTCCAAGAATGAGAATGAGAGCTCAATGAGATTGTCATCTTCTAAGGAGAATTTGAGCATCTCTGCTGACATTTCTTCTCAGGCAAGTCAGCTATGCAGTGAGAGTCGTTATTCAAGCCCTATAGCTTCTCCTTGTGCTGACAATGTGGCTGCAACCGCCGCGTTTGAGCCACCTTCTGTGGACACTAATCCTTCAAGCTTCTTGGTCTCCCCTGATATGATCCTTGATTCCTCAAAGGACTTTGCTCAAGCACAAGGTGTTATTTCAGGATACTTACCACATAATGAATTGCTAAGTGCAATGACACCATGGCAATCATTGGAACATACAGAAATTTCATCCAGTTCATCCTACTCAAATTTCAATGGGGAAATAGAATTCTCTGATGAACTCGGCTTAATCAGCCGCATGTCGCCTTACTCAGGACAAGTAGACTTGTTGGACTTCTATAGAAATGAGGATGTGCTGTATGATGGATATGACCAAATCAATTCAATCAGAGATCCAAGACATTTCTGA 1059 0.4325 MGGASLPPGFRFHPTDEELIGYYLKRKVDELEIELEVIPVIDLYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDKKVVSQSNPSTSIMKATGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDLGQDSPSFQGAYALCRVIKKNDKDKASDYKGKRGISSSKNENESSMRLSSSKENLSISADISSQASQLCSESRYSSPIASPCADNVAATAAFEPPSVDTNPSSFLVSPDMILDSSKDFAQAQGVISGYLPHNELLSAMTPWQSLEHTEISSSSSYSNFNGEIEFSDELGLISRMSPYSGQVDLLDFYRNEDVLYDGYDQINSIRDPRHF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00020 352 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
Stsc151045g00020 352 Gene3D NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
Stsc151045g00020 352 MobiDBLite consensus disorder prediction 169 194 - -
Stsc151045g00020 352 Pfam No apical meristem (NAM) protein 7 140 IPR003441 GO:0003677|GO:0006355
Stsc151045g00020 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 218 - -
Stsc151045g00020 352 FunFam Nac domain-containing protein 86 15 166 - -
Stsc151045g00020 352 ProSiteProfiles NAC domain profile. 6 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00020 Stsc-Chr151045 127410 129267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00020 1 312 NAC Transcription Factor Family AT4G17980 54.459 6.93e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151045g00020 NAM 8.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00020 - - adu:107487585 641.343