Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00019 ATGGAGATCGTCTACAACGACGTCGTTTCCAAGATCGTCTCCATGGGCTACGACCACGACCAAGCTCTCAAGGCCGTCCTCTCCAATGGCCATTGTTTCGGCGGCGTCGACGCCTTGGAGAACATTCTCAACAATTCCTTGGCTTATCTCAAAGGCAACGCCAATTTGGAAGGTAACGAAAATCCTATGCCTGTTTTCACCGATTTGATGCAGCTGGAGGCGTATTCTCTTGCCGCCATGGTTTGTCTCTTGCAGCAGTTGAGGCCCAATTTGACTAAGGGTGATGCATTGTGGTGTTTGCTTGTCTCTGATTTTCATATCGGAAAGGCTAGCACAATTCAAGCTCCAGGTGCAAGCAATGAGTGTTCTTGTTGTCCTTTGCATACTGCTACTGCTACTACCAACAACAATGGTGACAATGCAGTTGGTGTTGTGGCTCCATCTCCACCTGTTTGTGGCTCTCGATGGGAGCCTGCGGATTTCAATTTGGTCTTCGCTTGCGGCCATGAAATGAGTTTGAAATTGCAGAGAGATATTGAGTTCCCAAAAAGGTTCAATCTTTCTCCTTCTATGAAGTCCTTGTTGAAAAGAAATGTTGCATTGTGCGCTGCTGGTCTTAAGGCTCACTCAAAACAGTTTCAGCAGCCACTAGACAAGGCCGTTCCCGTCGGTATCACTGCGCCGGAAGCTGCTCTCCCGGGGGAGAAGGAGAAGGAGAAGGCGAGTGACCCTCACTATCTGAATGCCCAGGATGCTGTGACCTCCATGATGAATAAACTTTGTGAGATGAATCTTGATGATTCTATGAAGCGTCTTGAAGAGGATCAGAAGGATGAGGTGCTACTTGCTCTGTTTAATCAGGTTAAGGATCTTGAGAAAGAGGTGAAGGTCCGAAAGGATTGGGCTCATGAGAGGGCAGTGCAAGCAGCTACAAAGCTGAGCAATGATATGGCTGAGTTGAAAATGTTGAGGATGGAAAAAGAGGAGGCTCAGAAGTTAAAGAAAGGGAAGCAGGCGCTTGACGATTCGACGATGAAGAAATTGTTAGATATGGAGGAGGCCTTGAGGAAGACTAGTGGTGAAGTTGACCAGGCAAATTCAACTGTGAAAAAGTTAGAGACGGTGAATGCCGAAATCAGAGCAGAGTTGGAGGCTGCTAAATTGAGTGCTTCAGAGTCTGTCAAAGACTGTATACAGGTTGAGAAAAGGGAGAAAAAATGTTTAAAGAAGCTTCTAGCTTGGGAAAAACAGATAGCAAAGCTTCAACAGGAGATTTCAGATGAAAAACAGAAGATATTGGAGATTGAAGAAGAATTGCCTCGGATTAGACAGTTTCAGAAAGAAGCTGAGGTCAAGATCAGGGAAGAGATGAAGGCTAAAGAGGAAGCCCTGTTACTAATTGAGGAGGAACGCCGTAGTAAGGAAGCAGCCGAGGCTGACAAGAAGAGAGATCTTAAGGCTTTACGACTGAAGATAGAGATAGATTTCCAACGCCACAAGGATGATCTCCTGAGGCTCGAGCAGGAGCTTTCAAGCCTTAAAGTATCTGGTCGATCTGCTGATAGGCACCCTAAATCAAAAGCTTTATGGACAGGGGATTCTGAGGTTGCAAAGCCCCAAAGGGAGACAATAACAAAGCTTCTTAAAGAATTAGACAATCTTGAGGATCTTGAAAAAGAAGTCAACGGTGGCAGAGAATGTATCATATGCAAGGAAGAGGAAGTTTCAATTGTTTTCTTGCCGTGTGCACACCAAATTATGTGTGCTTGCTGCAGCCAGGAGTATGGTAGGAAGGGCAAAGCTACCTGTCCCTGCTGCCGGGTTCCAATTGAACAGAGAATCCGTGTATTCGGTGCAGGTTCTTAA 1866 0.4593 MEIVYNDVVSKIVSMGYDHDQALKAVLSNGHCFGGVDALENILNNSLAYLKGNANLEGNENPMPVFTDLMQLEAYSLAAMVCLLQQLRPNLTKGDALWCLLVSDFHIGKASTIQAPGASNECSCCPLHTATATTNNNGDNAVGVVAPSPPVCGSRWEPADFNLVFACGHEMSLKLQRDIEFPKRFNLSPSMKSLLKRNVALCAAGLKAHSKQFQQPLDKAVPVGITAPEAALPGEKEKEKASDPHYLNAQDAVTSMMNKLCEMNLDDSMKRLEEDQKDEVLLALFNQVKDLEKEVKVRKDWAHERAVQAATKLSNDMAELKMLRMEKEEAQKLKKGKQALDDSTMKKLLDMEEALRKTSGEVDQANSTVKKLETVNAEIRAELEAAKLSASESVKDCIQVEKREKKCLKKLLAWEKQIAKLQQEISDEKQKILEIEEELPRIRQFQKEAEVKIREEMKAKEEALLLIEEERRSKEAAEADKKRDLKALRLKIEIDFQRHKDDLLRLEQELSSLKVSGRSADRHPKSKALWTGDSEVAKPQRETITKLLKELDNLEDLEKEVNGGRECIICKEEEVSIVFLPCAHQIMCACCSQEYGRKGKATCPCCRVPIEQRIRVFGAGS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00019 621 Coils Coil 362 389 - -
Stsc151045g00019 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 618 IPR013083 -
Stsc151045g00019 621 ProSiteProfiles Zinc finger RING-type profile. 567 607 IPR001841 -
Stsc151045g00019 621 Coils Coil 404 438 - -
Stsc151045g00019 621 Coils Coil 310 340 - -
Stsc151045g00019 621 Coils Coil 442 480 - -
Stsc151045g00019 621 PANTHER OS05G0141500 PROTEIN 2 616 IPR046934 -
Stsc151045g00019 621 SUPERFAMILY RING/U-box 547 613 - -
Stsc151045g00019 621 Coils Coil 496 516 - -
Stsc151045g00019 621 CDD RING-HC_MIP1-like 565 616 - -
Stsc151045g00019 621 Pfam Zinc finger, C3HC4 type (RING finger) 565 612 - -
Stsc151045g00019 621 Pfam Family of unknown function (DUF6592) 4 110 IPR046527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00019 Stsc-Chr151045 119613 122327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00019 567 617 C3H Transcription Factor Family AT1G73950 41.176 1.93e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00019 - - adu:107487583 914.064