Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00018 ATGCCAGTTCCACTTGCTCCCTACCCAACAACCACAGTTCCATATACTACACCTCCATCAAATGGTGCACAAAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTTTTAATGTATCCAGTTGGAGCTACTTCAGTGTGTTGTGCAGTTTGCAATGCAGTCACTCCTGTGCCACCACCTGGCACAGAAATGGCCCAATTAATCTGCGGAGGATGTCACACTTTACTCATGTACATCCGAGGAGCCACAAGTGTCCAATGTTCTTGTTGTCACACCGTCAATCTAGCACTTGAAGCAAATCAGGTGGCGCATGTCAATTGTGGGAACTGTAGGATGCTGCTCATGTACCAATATGGAGCAAGATCAGTGAAATGTGCGATTTGCAGTTTTGTAACATCTGTTGGGGCCTCATCAACAAGCACCGATCAGAAATTCAGCGCTTGA 441 0.4649 MPVPLAPYPTTTVPYTTPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTPVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAICSFVTSVGASSTSTDQKFSA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00018 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
Stsc151045g00018 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Stsc151045g00018 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Stsc151045g00018 146 NCBIfam zinc finger domain, LSD1 subclass 26 55 IPR005735 -
Stsc151045g00018 146 NCBIfam zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Stsc151045g00018 146 NCBIfam zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Stsc151045g00018 146 PANTHER PROTEIN LSD1 10 56 IPR040319 -
Stsc151045g00018 146 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00018 Stsc-Chr151045 112964 114673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc151045g00018 zf-LSD1 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00018 - - jre:108994098 263.848