Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00017 ATGTATCCAGTTGGAGCTACTTCAGTGTGTTGTGCAGTTTGCAATGCAGTCACTCCTGTGCCACCACCTGGCACAGAAATGGCCCAATTAATCTGCGGAGGATGTCACACTTTACTCATGTACATCCGAGGAGCCACAAGTGTCCAATGTTCTTGTTGTCACACCGTCAATCTAGCACTTGAAGCAAATCAGGTGGCGCATGTCAATTGTGGGAACTGTAGGATGCTGCTCATGTACCAATATGGAGCAAGATCAGTGAAATGTGCGATTTGCAGTTTTGTAACATCTGTTGGGGCCTCATCAACAAGCACCGATCAGAAATTCAGCGCTTGA 333 0.4685 MYPVGATSVCCAVCNAVTPVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAICSFVTSVGASSTSTDQKFSA 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00017 110 Pfam LSD1 zinc finger 1 17 IPR005735 -
Stsc151045g00017 110 Pfam LSD1 zinc finger 32 56 IPR005735 -
Stsc151045g00017 110 Pfam LSD1 zinc finger 70 94 IPR005735 -
Stsc151045g00017 110 PANTHER PROTEIN LSD1 1 100 IPR040319 -
Stsc151045g00017 110 NCBIfam zinc finger domain, LSD1 subclass 29 58 IPR005735 -
Stsc151045g00017 110 NCBIfam zinc finger domain, LSD1 subclass 67 97 IPR005735 -
Stsc151045g00017 110 NCBIfam zinc finger domain, LSD1 subclass 1 19 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00017 Stsc-Chr151045 112964 114673 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc151045g00017 zf-LSD1 9.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00017 - - rcu:8284618 221.09