Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc151045g00015 | ATGGATTCTCGGGAACCCCACCACCAACCCTCCCATCATCACCACCACCATCACCACCACCACCAGCAACAGCAACCGCCTCCTAACATCATGGTCGGCGTGGGACCCACCCCTTACCCTCCCTCCATGATGGCCCCCACCACCGCCCGATTTCCCTTTACCTCCGTCGTCCACCACCAGCATCAGCAGCACCAGCACCAGCAACAGCAACAGCACCACCAGCAACAACAGCAACATCAGCAGCAGCAACAGCAACAGCACCATCACCAGCAGCCGCCCGCTCCACCAACCAACAACAACAACGGAAACGCCGCTAACGATAACAACAACAACGCCGCGCTTTACGATGGTTCCTCTTCCGCCCTTAAGCCCTGCGGATTCCCCACCACCGACTCCGCCTCGGTCACCAAGAAGAAGAGGGGCCGACCCCGCAAGTACTCCCCAGATGGCAACATTGCCTTGGGACTCTCCACCACCCACGCCTCCCCTTCTCCTGCAGCACCACCACGCGCCGATTCCTCTGCCGTAGTTTCCTCCGGTGGCGGTGCCACAACCCCCTCATCGGAGCCTCTCGCGAAGAAGCACAGAGGGAGGCCTCCTGGCTCCGGCAAGAAGCAGATGGATGCGCTTGGAGCTGGTGGAATTGGTTTTACTCCGCACGTGATCTTGGTGGAGTCTGGTGAGGATGTTGCAGCTAAAATTATGGCTTTCTGCCAGCAAGGACCTCGGACTGTCTGCATTCTTTCTGCTAATGGTGCAATCTGTAATGTCACCCTTAAGCAGCCAACAATGTTGGGGGGTACTGTGACATATGAGGGCCGATTTGAGATTATATCACTGTCAGGTTCTTTACTATATTCTGATAATAATAGTGATCGAAGCAGACCGGGTGGTTTGAATGTCTCCCTTGCAGGTTCCGATGGACGAGTTTTAGGGGGTGGAGTTGCTGGAATGCTTACTGCAGCATCACCAGTACAGGTCATTGTTGGTAGCTTTATTGAGGATGGCAAAAAGTCTAGTAGCTCAAGTAACCAGAAATCAGGGCCGTCAACAACGCCATCAACCCAAATGTTACATTTTGGTGCTCCCATGACTCCAACCAGTCCTACCTCTCAGGGGGCTTCATCGGAATCATCTGACGATAATGATCATAGTCCTCCTCCTAACAGGGGCCCTGGTCTCTATNNNNNNNNNNATAATGCTAGTCAGCCCATTCATAATATGTCGATGTACCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA | 1269 | 0.5343 | MDSREPHHQPSHHHHHHHHHHQQQQPPPNIMVGVGPTPYPPSMMAPTTARFPFTSVVHHQHQQHQHQQQQQHHQQQQQHQQQQQQQHHHQQPPAPPTNNNNGNAANDNNNNAALYDGSSSALKPCGFPTTDSASVTKKKRGRPRKYSPDGNIALGLSTTHASPSPAAPPRADSSAVVSSGGGATTPSSEPLAKKHRGRPPGSGKKQMDALGAGGIGFTPHVILVESGEDVAAKIMAFCQQGPRTVCILSANGAICNVTLKQPTMLGGTVTYEGRFEIISLSGSLLYSDNNSDRSRPGGLNVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIEDGKKSSSSSNQKSGPSTTPSTQMLHFGAPMTPTSPTSQGASSESSDDNDHSPPPNRGPGLYXXXXNASQPIHNMSMYHHQLWAGQTQQ | 422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Stsc151045g00015 | 422 | CDD | DUF296 | 218 | 332 | IPR005175 | - | |
| Stsc151045g00015 | 422 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 217 | 334 | - | - | |
| Stsc151045g00015 | 422 | ProSiteProfiles | PPC domain profile profile. | 213 | 354 | IPR005175 | - | |
| Stsc151045g00015 | 422 | SMART | AT_hook_2 | 137 | 149 | IPR017956 | GO:0003677 | |
| Stsc151045g00015 | 422 | SMART | AT_hook_2 | 193 | 205 | IPR017956 | GO:0003677 | |
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 1 | 211 | - | - | |
| Stsc151045g00015 | 422 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 70 | 385 | IPR039605 | GO:0003680 | |
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 335 | 382 | - | - | |
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 31 | 45 | - | - | |
| Stsc151045g00015 | 422 | Gene3D | - | 219 | 347 | - | - | |
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 335 | 401 | - | - | |
| Stsc151045g00015 | 422 | MobiDBLite | consensus disorder prediction | 53 | 134 | - | - | |
| Stsc151045g00015 | 422 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 219 | 333 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc151045g00015 | Stsc-Chr151045 | 101413 | 106567 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc151045g00015 | 136 | 373 | AT-hook Motif Nuclear Localized (AHL) Family | AT4G17950 | 53.876 | 7.67e-74 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc151045g00015 | - | - | qsa:O6P43_033975 | 410.994 |