Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00011 ATGGCTCCAGAGATTGGGCTTCTCTCAATGACCCAGATCCAAAAATTCTCACAATCCCAACAACAACAACAACAACAACACAAAAACAACAACCACCACCCTCCTCCTTCTTCTTCTTCTTCCCCACTTGATAAAAAGAAACAAAACCCTAAGGCAGCATCCATCAGCACTTGGATGTGGAACCCTAGGGAAGAGCACCAAGAAGATGACGACTCATGGGAGGTCAGAGCCTTTGCAGAGGACACTGGCAACATCATGGGCACCACCTGGCCACCGAGGTCCTACACCTGCACCTTCTGCAGGAGGGAGTTCCGCTCCGCTCAAGCCCTCGGTGGCCACATGAATGTCCACCGCCGCGACCGCGCTCGCCTCCACCACCAACCTCCTCTTCCTCCTCCCCCTCCTCCACCACCTCCGCCTTTCACTCCTCCTCCTCCCCCTCACCATCATCATCATCATCAATATCCATCCCCAGCAGCATTCATAAATGTTCCTCATCGTCACCATCAGGATCTGGTGGCAAATGCTGCAGGGTTGTGCCTCTTCTATCATTTGCCACCAAGCCCTAATAGTGCCACTACCTTGCCTGCTCATCCTTCTGCGTCTCCGTCTCCGTCTCCCTCCACTCTTCTCTCCATAACGTCATCTTCGTCGTCATCTTATCATCCACAAAACAACTTGATGACGACGATGATGCAACCTTGCTCTCCCTCCTTTGATTTCCCGTCCGGGATCAACGCCGTTTCTTCTTCTCCTTCTTCTTCTTACTGTACCAAAGTGATGGAAGATGCCCTCGTTAACAATAATAGTAACGGCCATCATCACCACCACCTTGAAGAGCTTGATCTAGAGCTACGCTTGGGGCAAAAGCGACCACCAACTCGACCAACCTAG 894 0.5179 MAPEIGLLSMTQIQKFSQSQQQQQQQHKNNNHHPPPSSSSSPLDKKKQNPKAASISTWMWNPREEHQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHQPPLPPPPPPPPPPFTPPPPPHHHHHHQYPSPAAFINVPHRHHQDLVANAAGLCLFYHLPPSPNSATTLPAHPSASPSPSPSTLLSITSSSSSSYHPQNNLMTTMMQPCSPSFDFPSGINAVSSSPSSSYCTKVMEDALVNNNSNGHHHHHLEELDLELRLGQKRPPTRPT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00011 297 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc151045g00011 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Stsc151045g00011 297 SMART c2h2final6 95 117 IPR013087 -
Stsc151045g00011 297 MobiDBLite consensus disorder prediction 127 145 - -
Stsc151045g00011 297 MobiDBLite consensus disorder prediction 193 227 - -
Stsc151045g00011 297 MobiDBLite consensus disorder prediction 124 156 - -
Stsc151045g00011 297 MobiDBLite consensus disorder prediction 10 56 - -
Stsc151045g00011 297 PANTHER OS07G0101800 PROTEIN 67 290 - -
Stsc151045g00011 297 Pfam C2H2-type zinc finger 95 119 - -
Stsc151045g00011 297 MobiDBLite consensus disorder prediction 1 72 - -
Stsc151045g00011 297 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00011 Stsc-Chr151045 69830 70723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00011 56 122 C2H2 Transcription Factor Family AT4G17810 78.571 1.14e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00011 - - adu:107487554 327.02