Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00006 ATGGAGGAATTAAATGCATCAGCAACCAACTGGTTATCTGATCTGGAGATGGATGAGTCCGAGTTGTTTTCAGAGTGGCATTTAAAGAACTTGCTGGATGAGGATGATGATGACAATCAGTTTCTTTCTCATGAGATGTTGATGAGTGCATTAGTACAGGAGGAGGGAGAGGGAGAGGGGGATTTTGAATTGCACCAACCACTACCTTTCTCTTGTAATTATGAGCAAACACTATGTTTGGAGGAGGAGATAAGGCCAGCCAAGCAACTCAGAACCTCATCATCATCATCAAGCATCACTGCCACCCACCAACAAAACTTGCCATCTAATTCTTCATCTTCTTCTTCTTCTCCCACTTCCCAGATTCTCTCTTTTGAAAACTCCTACAACTCCTCCTCCCCTCCTCCTCCTCTCATTTCCACCCACTTTTATGGCTTTGAATTTGATGTTACTACTACTACTAATAATAATAAGGTTTCTTCACTGCAACAACCACCACAAGCTGGTAATAACAAGAAGATCGAAGAAACAAGGAAACCCCAAAGTCATCAAGGGAGTAATAACAGAAGTAAGAGACAGGGAGCTCAGTCTCAGGATCACATCATGGCTGAGAGAAAGCGAAGGGAAAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCTACAGTGCTGGGAGATGCAATCAAGTACGTGAAAGAGCTTCAGTCGCGATTGAAGGTTCTAGAAGAAGAAGAACAGAACAAGAAGAGAGAAGTGAATTCTGTTTTGGTTGTGAAGAAGCCACATCCCGTGAGGAGCAGCGAGGATGCTGATTCGTCTACCTGTGATGATGACAGCTTGGAAGCAGCAGCAGTGGCACACGTGGAAGCAAGAGTTGCGGCGTCGGAGAAGGAGGTGCTGCTCCGGATCCACTGCAAGAAACAGAAGGGCATTTTCGTCAAATTACTCTCGGAGATACAAAGGCTTCACCTCTTTGTTGTCCATAGCAGTGTGCTACCATTCGGGGATTCACTTCTTGACATTACAATCGTCGCTCAGATTTTTGATGGATCAGATGGGCAGAGAATACAAGTTGAGCATTAA 1113 0.4465 MEELNASATNWLSDLEMDESELFSEWHLKNLLDEDDDDNQFLSHEMLMSALVQEEGEGEGDFELHQPLPFSCNYEQTLCLEEEIRPAKQLRTSSSSSSITATHQQNLPSNSSSSSSSPTSQILSFENSYNSSSPPPPLISTHFYGFEFDVTTTTNNNKVSSLQQPPQAGNNKKIEETRKPQSHQGSNNRSKRQGAQSQDHIMAERKRREKLSQSLIALAALIPGLKKMDKATVLGDAIKYVKELQSRLKVLEEEEQNKKREVNSVLVVKKPHPVRSSEDADSSTCDDDSLEAAAVAHVEARVAASEKEVLLRIHCKKQKGIFVKLLSEIQRLHLFVVHSSVLPFGDSLLDITIVAQIFDGSDGQRIQVEH 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00006 370 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Stsc151045g00006 370 MobiDBLite consensus disorder prediction 156 208 - -
Stsc151045g00006 370 MobiDBLite consensus disorder prediction 89 136 - -
Stsc151045g00006 370 MobiDBLite consensus disorder prediction 156 171 - -
Stsc151045g00006 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 263 IPR036638 GO:0046983
Stsc151045g00006 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 244 IPR011598 GO:0046983
Stsc151045g00006 370 SMART finulus 201 250 IPR011598 GO:0046983
Stsc151045g00006 370 PANTHER BHLH TRANSCRIPTION FACTOR 19 358 - -
Stsc151045g00006 370 Coils Coil 234 261 - -
Stsc151045g00006 370 MobiDBLite consensus disorder prediction 183 197 - -
Stsc151045g00006 370 Gene3D - 192 269 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00006 Stsc-Chr151045 31402 33184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00006 8 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.734 2.10e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151045g00006 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00006 - - adu:107487595 350.132