Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00003 ATGATATCCACCGATGAATCATGGACTACTTGGCTCTGTGATTTGGAAGAGGATGACTACGCTTTTATGAATAGGCTTGCTAATGACAATGCCATAACAGTAGCCCCTAATAATAACTCCAACTCAAACTCCCAAACATCCTTCTCCACAGATAGTAACAATGATGATGAGAGGCCATTAAAGGCTCTCAAGACCATCACCACCCCGCCAACCCCAACTAACAAGGATTCCTCATACCTTTTCTCCTTCAACAACAATAATCCATCAATGTCTACTGATTCTCATGCTACAAACAAGAAGCAGCCAAGACGCAGTAGTAATCAAAGAAGAACTGCCTCAGCTGGCAGATCCCCCCAACACGCTCACGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATCAGCCAACAGTTCATAGCTCTTTCTGCTCTTATTCCAGGTCTCAAAAAGATGGACAAGGCTACGGTGTTAGGGGACGCTATCAAGTACGTGAAGCAGCTGCAAGATCAAGTGAAGATTCTAGAAAACGAAAGGAAAAGGAAAAACGCGGAGTGTGCTGTTTATGTTGTTGAGAAATCAGAGGTGTGTGGAGAGGAAGATGTGTCATCAGACACTTCCTCCAATAATTCTTCAGGTGGAGTAGGGGATGGAAACTCGGTTAGTAGGTCGGTGCTGCCTGAAGTGGAGGCAAGGGTGTCTCAGAAGAACGTCCTCATTCGGATCCACACCGAGCAACACAAGGGACTCCTAATGCACATTCTCACACTCATTGAGAAACTCCATCTCTCTGTTCTCAACACCACTTCCTTGCCATTTGGAACCTCAATCGTCGACATAACCATCACAGCCGAGATGGATGATAAGTTCAGCTTAGGCGTAAAGGAGCTTGCTAGAAACATAAGGGTGGGGCTGTTGCAATTGATGTAG 930 0.4538 MISTDESWTTWLCDLEEDDYAFMNRLANDNAITVAPNNNSNSNSQTSFSTDSNNDDERPLKALKTITTPPTPTNKDSSYLFSFNNNNPSMSTDSHATNKKQPRRSSNQRRTASAGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQDQVKILENERKRKNAECAVYVVEKSEVCGEEDVSSDTSSNNSSGGVGDGNSVSRSVLPEVEARVSQKNVLIRIHTEQHKGLLMHILTLIEKLHLSVLNTTSLPFGTSIVDITITAEMDDKFSLGVKELARNIRVGLLQLM 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00003 309 MobiDBLite consensus disorder prediction 199 221 - -
Stsc151045g00003 309 PANTHER BHLH TRANSCRIPTION FACTOR 39 307 - -
Stsc151045g00003 309 MobiDBLite consensus disorder prediction 201 219 - -
Stsc151045g00003 309 SMART finulus 125 174 IPR011598 GO:0046983
Stsc151045g00003 309 Pfam Helix-loop-helix DNA-binding domain 124 169 IPR011598 GO:0046983
Stsc151045g00003 309 Coils Coil 158 185 - -
Stsc151045g00003 309 MobiDBLite consensus disorder prediction 32 122 - -
Stsc151045g00003 309 MobiDBLite consensus disorder prediction 32 53 - -
Stsc151045g00003 309 MobiDBLite consensus disorder prediction 66 96 - -
Stsc151045g00003 309 Gene3D - 118 188 IPR036638 GO:0046983
Stsc151045g00003 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Stsc151045g00003 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00003 Stsc-Chr151045 19163 20818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00003 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 35.224 8.96e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151045g00003 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00003 - - ahf:112748090 343.199