Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00002 ATGATGCAAATTGCATCCACCAACTACTTGCCTGAATTTGGAATGGAGGAATACTACCCTAACGTGATGGACTCATTTGAAGAGATGCTTGATGAGTTTGAGATGGACATGCAATGTTCAATAATGTCATCACCCTCACCGGACTGCTATTCCAACTCTGAAACCAAGCCACCAACACATTCTCTTTTATTCACTCCTCATCATCATCACTCCTCCTCTAAACCACCGCAACCAACCAATAAGAACCAAACTACTACCACTGTCATGCCTTCTAGGTCTGCCTCTCCATCACCACCGCCGCCGCAACTCATCTCCTTCGAGTCACCCTCTCTTTCTAATTCTTCCAACCATAGTAACATGGATGACATTCATTTTGCCGCTGCTGCCTTCTACCACCACAACTCTGCTTTCTTCAACTATGATAATAATAAGGTCCCTCCCGCCACAGTTAGGAACCCAATCCAAGCTCAGGAGCACGTAATTGCAGAAAGGAAACGCAGGGAAAAGCTCAGCCAGAGGTTCGTGGCTCTTTCTGCCATGGTCCCCGGCCTCAAGAAGATGGACAAGGCTTCTATATTGGGAGATGCCATAAAATATGTGAAGCAACTACAGGATAGAGTGGAGAGTTTGGAGGAAGAGGCAAGAAAGAAAAGGGTTGAATCAGGGGTGGTAGTAAAGAGATGTTTGGTGTTTGTTGATGGTGAAGATGATAATGAGAATGAAAGTTCGTCATCTAATAGTGAGAATACATTGCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACATACTCATAAGAATCCACTGCCATAAACAACAGTGCAATAACACTGCAATAATATTGGCTCAATTAGAGAAGCATCATCTCACTGTTCACACCACCACCTCTTTGCCCTTTGCCAATAACACTCTCGATATCACTATTCTCGCTCAGATGAAGAAGGAATACTCCATGAGGACAGAGGATCTATTAGGAAGCCTACGGGTGGCTTTGACACAATGA 1002 0.4421 MMQIASTNYLPEFGMEEYYPNVMDSFEEMLDEFEMDMQCSIMSSPSPDCYSNSETKPPTHSLLFTPHHHHSSSKPPQPTNKNQTTTTVMPSRSASPSPPPPQLISFESPSLSNSSNHSNMDDIHFAAAAFYHHNSAFFNYDNNKVPPATVRNPIQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQDRVESLEEEARKKRVESGVVVKRCLVFVDGEDDNENESSSSNSENTLPEIKARVSGKDILIRIHCHKQQCNNTAIILAQLEKHHLTVHTTTSLPFANNTLDITILAQMKKEYSMRTEDLLGSLRVALTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00002 333 Coils Coil 193 220 - -
Stsc151045g00002 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Stsc151045g00002 333 PANTHER BHLH TRANSCRIPTION FACTOR 26 332 - -
Stsc151045g00002 333 MobiDBLite consensus disorder prediction 45 92 - -
Stsc151045g00002 333 SMART finulus 160 209 IPR011598 GO:0046983
Stsc151045g00002 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Stsc151045g00002 333 MobiDBLite consensus disorder prediction 45 116 - -
Stsc151045g00002 333 CDD bHLH_AtNAI1_like 156 227 - -
Stsc151045g00002 333 Gene3D - 150 219 IPR036638 GO:0046983
Stsc151045g00002 333 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00002 Stsc-Chr151045 12749 14225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00002 132 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.020 1.03e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151045g00002 HLH 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00002 - - aip:107642660 374.785