Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151045g00001 ATGCGTTTCCTTTTCTTTCTTCTGCTTCTTCTCTTACAGCACCACTACAAAACCACCCTCTCCGCAACCATGTCGGAGAACCGTGCCCTTCTCTCTCTCAGAGCCACCATCACTGATTCAACCCCGCCTTCCCTCTCTTCCTGGAACGCCACTACCCCATACTGCTCCTGGCGAGGTGTCACCTGCGACCACCGCCGCCACGTCACCGCCATCGACCTAACCTCCCTCGCCCTCTCTGGTACGCTCTCCCCCGATGTCTCTCACCTCCCCTTCCTCTCCAACCTCACCCTCGCCGACAACACCTTCTCCGGCCCCATCCCTCCTTCTCTCTCATCCCTCTCTGCACTCCGGTTCCTCAACCTCTCCAACAACGGCTTCAACGGCACCTTCCCCGACGACCTCTCACGCCTTAACAACCTTCAAGTTCTCGACCTCTACAACAACAACCTCACCGGACAGCTTCCTCTCGCCGTCACTCAGATGCAGAGCCTCCTGCATTTGCACCTCGGTGGCAACTACTTCTTCGGCCAGATCCCGCCGGAGTACGGAACCTGGCATCGTCTTCAGTACCTCGCTGTTTCCGGCAACGAGCTCGCCGGGCCCATCCCTCCGGAGATTGGCAACCTCACCAGCCTCCGGGAGCTTTACATTGGCTACTACAACACCTACACCGGCGGCATTCCGCCGGAGATCGGAAATATGTCGGCGCTGGTTAGGTTCGACGCCGCTAACTGCGGATTAACCGGCGAGATTCCACCGGAGATTGGAAAGCTCCAGAACCTCGACACTCTGTTTCTTCAGGTGAATGCGCTTTCGGGTTCACTAACGAGAGAGATTGGGAATTTAAAGAGCTTGAAATCATTGGATTTATCCAACAACGCACTTTCCGGCGAGATTCCGGCGAGTTTTGCGGAGCTGAAAAACCTAACTCTGCTGAACCTGTTCAGGAACAAGCTTCACGGCTCAATACCAGAGTTCATAGGTGAGTTACCAGCATTGGAAGTGCTTCACCTTTGGGAGAACAACTTCACCGGAAGCATCCCTCAAGGTTTGGGCAACAACGGGAAGCTCATCGACGTTGATCTTTCTTCCAACAAGCTCACCGGCACGCTTCCTCCTCACGTGTGTTCCGGTAACAACCTTCAGACTCTGATAACTCTCGGTAACTTCCTGTTTGGTCCAATCCCTGAATCGCTTGGCAAGTGTGAATCCCTCACTAGGATCCGAATGGGTGAGAATTTTCTGAATGGTTCAATCCCAAAGGGTCTCTTCGGCCTTCCGAATCTCTCGCAGGTTGAGCTTCAGGACAATCTTCTTACCGGTGAGTTCCCTGAAGGTGATGCTTTCTCTGTCAATCTTGGTCAGATTAGTCTTTCTAACAACCAGCTTTCTGGGCCCTTGCCACCTTCCATTGGGAACTTCTCCGGCATGCAAAAACTCCTCCTTGATGGCAACAAGTTCTCCGGTCGTATTCCACCGCAGATTGGGAGGTTGCAGCAGCTGTCCAAGATTGATATCAGCCACAATCTGCTCTCGGGTGCTATCCCAAAAGAGATCAGCCAATGCAAGTTGTTAACTTTTGTTGATCTTAGCCGAAATGAGCTCTCTGGTGAGATTCCTAACGAGGTCACTGGGATGAGGATACTTAACTACTTGAACCTCTCCAGGAACCATCTTGTTGGTAACATTCCTTCGTCCATATCCACAATGCAGAGCTTGACTTCTGTTGATTTTTCGTATAACAATCTCTCTGGTTTGGTTCCTGGCACCGGCCAATTCAGCTACTTCAACTACACCTCTTTCCTTGGAAACCATGATCTCTGTGGACCCTATCTGAGTCCCTGCAAGGATGGTGCTGACAATGGTGGCCGCCAAAATCATGCTAAGGGCCATATCTCTTCTTCCTTGAAGCTGATAATTGTGATAGGGTTGCTTGTGTTCTCCATTGTTTTTGCAGCTGTGGCAATCTTAAAGGCCAGGTCTTTGAAGAAGGCAAGCCAGGGGCGCTCTTGGAAACTGACTGCCTTCCAACGTTTGGACTTCACGGTGGATGATGTTTTGGATTGCTTGAAAGAGGACAACATCATAGGGAAAGGAGGTGCAGGCATTGTGTACAAGGGCGCAATGCCGAACGGGGAGCAGGTTGCTGTGAAGAGGCTCCCAGCTATGAGTAGAGGCTCTTCTCATGATCATGGATTCAATGCGGAANNNNNNNNNNGACACAGGCACATTGTTAGGTTACTAGGTTTCTGTTCTAACCATGAGACCAATCTTTTAGTGTATGAGTACATGCCCAATGGAAGTCTAGGTGAAGTTCTTCATGGCAAGAAAGGGGGGCATTTGCATTGGGACACAAGGTACAAAATTGCTGTGGAGGCTGCAAAGGGTCTTTGCTATCTACACCATGATTGTTCGCCGCTCATTGTTCATCGCGATGTGAAATCAAACAACATACTTCTTGATTCTGGTTTTGAAGCTCATGTTGCTGATTTTGGTCTTGCCAAGTTCTTGCAAGATTCTGGAGCATCTGAGTGCATGTCCGCAATTGCTGGATCATATGGATACATAGCCCCTGAGTATGCCTACACATTGAAAGTAGATGAGAAGAGCGATGTGTACAGCTTCGGCGTGGTCCTTTTGGAGCTTATAACAGGGAAGAAACCAGTTGGAGAATTCGGTGACGGTGTGGATATCGTGCAGTGGGTGAGGAAAATGACAGACTCTAACAAGGAAGGAGCTCTCAAAGTTCTTGATCCAAGGCTTCCGTCAGTTCCCCTTCATGAGGTGATGCATGTTTTCTATGTAGCAATGCTGTGTGTTGAAGAACAAGCAATTGAACGTCCAACTATGCGTGAAGTTGTTCAGATTCTCACAGAGGTTCCAAAGCCACCTGGGTCTAAACAAGGAGACTTAACAATTACAGAGTCATCTTTGTCTTCATCAACTGCATTAGAGTCTCCAACTACAGCCTCAAATCATCATCATCATGAAGATGAGCGCGAGCACGAGCACCAACACCCCCCTCAATCTCCACCAACTGATCTCCTAAGCATTTGA 3057 0.4966 MRFLFFLLLLLLQHHYKTTLSATMSENRALLSLRATITDSTPPSLSSWNATTPYCSWRGVTCDHRRHVTAIDLTSLALSGTLSPDVSHLPFLSNLTLADNTFSGPIPPSLSSLSALRFLNLSNNGFNGTFPDDLSRLNNLQVLDLYNNNLTGQLPLAVTQMQSLLHLHLGGNYFFGQIPPEYGTWHRLQYLAVSGNELAGPIPPEIGNLTSLRELYIGYYNTYTGGIPPEIGNMSALVRFDAANCGLTGEIPPEIGKLQNLDTLFLQVNALSGSLTREIGNLKSLKSLDLSNNALSGEIPASFAELKNLTLLNLFRNKLHGSIPEFIGELPALEVLHLWENNFTGSIPQGLGNNGKLIDVDLSSNKLTGTLPPHVCSGNNLQTLITLGNFLFGPIPESLGKCESLTRIRMGENFLNGSIPKGLFGLPNLSQVELQDNLLTGEFPEGDAFSVNLGQISLSNNQLSGPLPPSIGNFSGMQKLLLDGNKFSGRIPPQIGRLQQLSKIDISHNLLSGAIPKEISQCKLLTFVDLSRNELSGEIPNEVTGMRILNYLNLSRNHLVGNIPSSISTMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNHDLCGPYLSPCKDGADNGGRQNHAKGHISSSLKLIIVIGLLVFSIVFAAVAILKARSLKKASQGRSWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPNGEQVAVKRLPAMSRGSSHDHGFNAEXXXXHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSGFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKKPVGEFGDGVDIVQWVRKMTDSNKEGALKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAIERPTMREVVQILTEVPKPPGSKQGDLTITESSLSSSTALESPTTASNHHHHEDEREHEHQHPPQSPPTDLLSI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151045g00001 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Stsc151045g00001 1018 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 162 952 - -
Stsc151045g00001 1018 Gene3D Ribonuclease Inhibitor 503 615 IPR032675 -
Stsc151045g00001 1018 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Stsc151045g00001 1018 SMART LRR_typ_2 113 132 IPR003591 -
Stsc151045g00001 1018 SMART LRR_typ_2 330 354 IPR003591 -
Stsc151045g00001 1018 SMART LRR_typ_2 282 305 IPR003591 -
Stsc151045g00001 1018 SMART LRR_typ_2 498 522 IPR003591 -
Stsc151045g00001 1018 SMART LRR_typ_2 570 593 IPR003591 -
Stsc151045g00001 1018 SMART LRR_typ_2 137 161 IPR003591 -
Stsc151045g00001 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 83 326 - -
Stsc151045g00001 1018 Pfam Protein tyrosine and serine/threonine kinase 692 957 IPR001245 GO:0004672|GO:0006468
Stsc151045g00001 1018 SUPERFAMILY RNI-like 71 392 - -
Stsc151045g00001 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Stsc151045g00001 1018 Gene3D Transferase(Phosphotransferase) domain 1 764 971 - -
Stsc151045g00001 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 974 - -
Stsc151045g00001 1018 SMART serkin_6 690 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151045g00001 1018 MobiDBLite consensus disorder prediction 960 1018 - -
Stsc151045g00001 1018 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Stsc151045g00001 1018 Gene3D Ribonuclease Inhibitor 23 216 IPR032675 -
Stsc151045g00001 1018 Gene3D Phosphorylase Kinase; domain 1 657 763 - -
Stsc151045g00001 1018 ProSiteProfiles Protein kinase domain profile. 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151045g00001 1018 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 763 - -
Stsc151045g00001 1018 SUPERFAMILY L domain-like 299 615 - -
Stsc151045g00001 1018 MobiDBLite consensus disorder prediction 969 989 - -
Stsc151045g00001 1018 Gene3D Ribonuclease Inhibitor 379 502 IPR032675 -
Stsc151045g00001 1018 Gene3D Ribonuclease Inhibitor 217 376 IPR032675 -
Stsc151045g00001 1018 SUPERFAMILY Protein kinase-like (PK-like) 683 957 IPR011009 -
Stsc151045g00001 1018 MobiDBLite consensus disorder prediction 990 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151045g00001 Stsc-Chr151045 717 4915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151045g00001 19 987 Receptor kinase-like Gene Family AT5G65700 79.184 0.0 1556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc151045g00001 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151045g00001 - - gmx:547593 1647.48