LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151044g00057	ATGATGCAAGAACCAAGCCTGGGCATGATGGGCGGCTTGGGCGGAGGAGACATGTCTTCAGGCACAGGCTCCGGCGAGCACCAGCAACGACAGCTGAAGGCGGAGATAGCAACACACCCGCTGTACGAGCAGGTTCTGGCAGCACACGTGGCATGCCTGAGAGTGGCAACACCAATAGACCAGCTTCCTCTTATAGAAGCACAGCTCTCACAGTCACACCATGTTCTCCGATCTTATGTCTCTCAACACACTCTCTCTCTCTCCCCTCACGACCGTCAAGACCTTGATAATTTCCTCGCACAATACTTGATAGTTTTGTGTACTTTCAAAGAGCAGCTTCAGCAGCATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCCTGCCGTGACATCGAAAATACCTTGCAAGCTCTCACCGGAGTGAGCTTGGGAGAAGGAAGTGGGGCGACAATGTCAGATGATGAAGATGAATTTCAGATGGATTTCTGTTTGGACCAGTCTAGTGGTGGTGGTGGTGATGACATGATGGGATTTGGTCCCTTACTCCCTACTGAATCAGAAAGGTCACTCATGGAAAGAGTCCGTCAAGAACTGAAGATTGAGCTGAAGCAGGGATTCAAGTCAAGGATTGAAGATGTTAGGGAAGAAATCCTCAGGAAACGTAGAGCTGGCAAATTACCGGGTGATACCACTTCTGTCTTGAAGAACTGGTGGCAGCAGCATGCTAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTAGTGGAAGAGACAGGGTTGCAGCTCAAGCAAATCAACAATTGGTTCATCAACCAAAGAAAACGCAATTGGCACAGCAACTCTCAATCAGTTACCTCCCTCAAGTCCAAGCGCAAAAGAATGTAA	888	0.4932	MMQEPSLGMMGGLGGGDMSSGTGSGEHQQRQLKAEIATHPLYEQVLAAHVACLRVATPIDQLPLIEAQLSQSHHVLRSYVSQHTLSLSPHDRQDLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEFQMDFCLDQSSGGGGDDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151044g00057	295	Pfam	Homeobox KN domain	237	276	IPR008422	GO:0003677\|GO:0006355
	Stsc151044g00057	295	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	90	281	-	-
	Stsc151044g00057	295	ProSiteProfiles	ELK domain profile.	197	217	IPR005539	GO:0003677
	Stsc151044g00057	295	SMART	KNOX1_2	30	74	IPR005540	GO:0003677\|GO:0005634
	Stsc151044g00057	295	SMART	KNOX2_2	85	140	IPR005541	GO:0003677\|GO:0005634
	Stsc151044g00057	295	Gene3D	-	216	290	-	-
	Stsc151044g00057	295	FunFam	homeobox protein knotted-1-like 3 isoform X1	218	279	-	-
	Stsc151044g00057	295	MobiDBLite	consensus disorder prediction	1	31	-	-
	Stsc151044g00057	295	SUPERFAMILY	Homeodomain-like	219	284	IPR009057	-
	Stsc151044g00057	295	CDD	homeodomain	220	281	IPR001356	GO:0003677
	Stsc151044g00057	295	SMART	HOX_1	219	284	IPR001356	GO:0003677
	Stsc151044g00057	295	ProSiteProfiles	'Homeobox' domain profile.	217	280	IPR001356	GO:0003677
	Stsc151044g00057	295	Pfam	KNOX1 domain	32	73	IPR005540	GO:0003677\|GO:0005634
	Stsc151044g00057	295	Pfam	KNOX2 domain	88	139	IPR005541	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151044g00057	Stsc-Chr151044	296555	300167	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151044g00057	2	293	Homeobox Transcription Factor Family	AT1G62990	79.592	1.43e-172	477

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Stsc151044g00057		KNOX2	1.2e-16	No_clan